Array 1 2435-1873 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BASL01000761.1 Candidatus Protochlamydia sp. R18 strain S13, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                                	Insertion/Deletion
==========	======	======	======	===============================	===============================================	==================
      2434	    31	  87.1	    47	.......G.T........A.......G....	TTAAATCTGAGTGGGTACATGTCCAATCTCACGGATGCTGGATTAGC	
      2356	    31	 100.0	    44	...............................	CTGAATCTGCACTGGTGCGATAAGCTCACTGACGATGGATTGGC   	
      2281	    31	  93.5	    44	........GG.....................	TTAAATCTGAGTAAGTGCCCTAAGCTCACTGATGCTGGATTGGC   	
      2206	    31	 100.0	    47	...............................	TTAGATCTAAGTTGGTGCCCGCTGAATCTCACCGACGCTGGATTAGC	
      2128	    31	  74.2	    44	.T.....G.T......A.AG..C.....T..	TTAAATTTATGTTGCTGCAATGAGCTCACTGACATTGGATTAAT   	
      2053	    31	 100.0	    44	...............................	TTAGATCTGAGTGGATGCGATAATCTCACTGACGCTGGATTAAT   	
      1978	    31	  93.5	    44	..........T.......A............	CTAAATCTGCGTTGTTGCGATAATCTCACTAAAACTGGATTAAT   	
      1903	    31	  83.9	     0	.........TT.......A.......G...G	|                                              	
==========	======	======	======	===============================	===============================================	==================
         8	    31	  91.5	    45	GCATTTGACACCCTTAGTCAATTTACAGCAT	                                               	       

# Left flank :   CGGGAAATTTTCAAGAAACTCTTCAAGATCCTCTCACTTTGACAAAAAAAGAATTTACTTATCTGGTTAACTGCCTGTTAGATGCTAATTATAAAGTTCCTTTAAAAAAAATTTGTTCTTTCATTCAATTAGCCGACTATTATCAACTGACAGAGGTTGTGAAGAATTTAGAAGAACAGTTGATTGATGGATATAAATTACAAAGGTTGGAGCTATTTGACTCTAACGAAGATAGCCTAATAGAATTAAAAGAACTTTTAAATTTCGCGCAGCAATATCAATTAAACACTTTAAAAAATTATTTAGAACTCACAGTGGTAAGTTCATTATTAAACCAGGCTTCTCATTTAACAGAATTTGAAAAAATTATAAATTACTTTGCAAATGCAATAGAAGGGCTCAATTTTTCAGAAAATGTTTATCTAACAGATATTCATCTCTTAGCATTAAAAAGCTGGGAGCTTACTGACGCTAGATTAG
# Right flank :  TTAGATTTGAGTTGGTACTCGCCCGATCTCAATGAAGCTGGATTACCCCTCTTTAAGACTTCACAGCCTTGGGACGAGCTTTATCATTACAGACATCTTCTTCAAGCTAAATTAGCATATACTAGCTTTTTACGTAGAGGACAGTGGGGTTTGCCTACATCGATACGAATATACTGGATGCTTCTGAATTAGCGCATTTTAAATTCCTAGTAGATAAATCACATTTAGGTTTGTGTTGGTACAAAAACTCTTAATGATGCAGAATACATAAGTATTATTCCCTCAGAAAAAGCTACTAAAATTTAAATAGCAAAAGTCCTCTGCACGATTTAGAACATTTATTTTCCACAACCCATGTTTAACATAACATGAGAGGTCAAAATGGATTTAATCAACTTTTATTATCGTTTAGATGATTTCTTGAAAGTCCTTTGAGCAAAAATGGGATAAACACCTAATTGATCGTGGCAAGACAAAGCGAAGGCCCTAATCTGAATGAT

# Questionable array : NO	 Score: 2.52
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCATTTGACACCCTTAGTCAATTTACAGCAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.29%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-3.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.41   Confidence: LOW] 

# Array family : NA
//