Array 1 1882612-1881363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015588.1 Streptomyces alfalfae strain ACCC40021 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1882611 29 100.0 32 ............................. TCGGGGAAGACGGCTGCGGGGTCGTCTGCGGG 1882550 29 100.0 32 ............................. TCGCCACAAGCCTGCAATTCCAGGTGTTCGCG 1882489 29 100.0 32 ............................. CTGGCAGGGTAGCGGCGGATGAGATCGGCGAG 1882428 29 100.0 32 ............................. ATCTCGACGGCGCCCTTCCACATGCTGGTGAA 1882367 29 100.0 32 ............................. CTTTGCTGACCACCGGCCGCTTTGGCTGCTTC 1882306 29 100.0 32 ............................. CCCGTCCGCTCCTGCTCCGACAGCCCACCCCA 1882245 29 100.0 32 ............................. GCGAAAGTCATCTCCCTGGAGACCGCCATCCG 1882184 29 100.0 32 ............................. ACTCCTTCGGGGGCGAGGCCAGGCTAGGGGAC 1882123 29 100.0 32 ............................. CTGTTCGAAGCGGTGCCGGGGCATGGTGAGGA 1882062 29 100.0 32 ............................. CGTGAACATCATGATGTGACGACCCACCGCCG 1882001 29 100.0 32 ............................. CCCGTACGCCTCGCCTCCTGAACTGCCACCCG 1881940 29 100.0 32 ............................. CACGAGGATCATGGCGGCGCGTCATGGCCGCC 1881879 29 100.0 32 ............................. ACGTACAAGATCGCTTCTCCGTCCGGCAACGA 1881818 29 100.0 32 ............................. AACCGTTCGGCCGCGCCGGTACTGCTCATCAG 1881757 29 100.0 32 ............................. ACGGCAGGACGGAGCGAAGCCGTGAGCCGACA 1881696 29 100.0 32 ............................. CCCCGGCCGGATCGGCTCGGGGCGTGCGGTGA 1881635 29 100.0 32 ............................. CCCGGTCAGGACCGAGGAGAGGACTTCTCCCC 1881574 29 100.0 32 ............................. GCGATGCCGAGCCAGAACAAGGCCCTGAAGGA 1881513 29 100.0 32 ............................. CTTGTCGCTGACCTTGCGCTGCTTCCTCTCGG 1881452 29 96.6 32 ............T................ CCGCCCGGATACGCGATCTGGCCGCAGATCTC 1881391 29 79.3 0 .G...T....T.........C.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGCTGACGTACGCCGGATCCTCGCGAATTGGCTTGTAGAGGAAAGGGACCTGAGCCTGAAACGGAGGAGTGATCTTGCCGATGTCATGCAACCCGGCCCAGAACGAGACCACTGACCGTGCCTCTGCCACGCTCAGGCCGAGCGCATCCGCAATGGCCGCCTTGGTCTCGTCGCTCAGAACGACATCCCACAGCACCTCGAACACCGCACTGGTATCAAGAAGATGGCACACCACCGGATACGGCTGCGACAGCCCGCTCTCCTTGCCCCACAGCCGAACATCCAGAACACAGTCCCCCGAGGCTCCCGCCTCGTCGAGCTTCAGCATGTCCACAGAGGTAGCACGCCCCACTGACAACGGCCCCAAATAGCCCAAGTTGACCCCGGCTTGAGGGGAGGGTCTTACACTCGCTGCGCGATGACAACGAATCGAGACGCATACACAGCGAGGGTCTGCAAAGAGATGGCAAAGCGGTCGAGTAAGACCAGGTCGCGAAGG # Right flank : TCGGCCCCGGCGCCCCCCAGGGTGGCGCAATGCAGAAACGCGCTAGGTGCTTAGAAGGCACGTGCTCTATCCGCTGAGCTACGGGGGCTGACCTGCGTAAACGCAGCTTCCGGGAGTTGTCCCCCAGGTCGCGGGGGAAATATGGGGAATCGCGGATTCCCGGTGACAGGGGGACGCGAGCGCTTCCTGATCGGGCAGTACGTAAGGTCTCACATTATCTTCACGGCCCCCGAAGGCTCTCACGGAAACAATCCCGCACCCCGTCGGCGTTGGTGATCTCCGAGCCGAGGAGGAGAAGGTGTCGGGCCTGAAGCTGTTCCGCACGGACACGACGAATAGCGGCATGACGGAGGTCATGCCGCGTCTTGCTGAGATCGAGGCCGATGTGCAGGGCCTTGTCGAGGCGCACATGGAGACGCTGCTGGGCGTGCGGTTCCTGGCGAGCGAGTACAGCACGGGGCCCGCCCACGGGGGCCGGATCGACTCGCTCGGGCTGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1892283-1894628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015588.1 Streptomyces alfalfae strain ACCC40021 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1892283 29 100.0 31 ............................. CCGTCACCGTCCACGCGACAGGGCAGCGCGA 1892343 29 100.0 32 ............................. CCTCAACCCCAAGCGCGGCGTCGGCACCCTCA 1892404 29 100.0 32 ............................. ACGTCCGCAGACTCGCCCGGCAGTGCACCGTG 1892465 29 100.0 32 ............................. CTCGCCGAGGCCGCGCAGGATCACGACCAGGC 1892526 29 100.0 32 ............................. CGGCGCAGGCCGACCCCACCAGCTTTGCACTG 1892587 29 100.0 32 ............................. CGTCACCGAGATCCCGTCCATCAGGAGCAGGG 1892648 29 100.0 32 ............................. ACCTCCGCGGCATCCACGCCGGCATCGACCTC 1892709 29 100.0 32 ............................. CCGACACCATCGCTGCCCGCAACGACGTCCTC 1892770 29 100.0 32 ............................. TTCGAGGCGGGCCTGGACGACCTCTCGGAATC 1892831 29 100.0 32 ............................. TGACCCCGGGCCCGCCCGGCAGGCGAATGCGC 1892892 29 100.0 32 ............................. CAGATCTTCGGGTACTTCCCCACGCCCACCCC 1892953 29 100.0 32 ............................. CAGAGCGCTCCCTCTGTCTGGCTCTCACCGCC 1893014 29 100.0 32 ............................. TCCTGCTCGATGAGCCGCATGCTCACGGCGGC 1893075 29 100.0 32 ............................. CCACCGACGCGGGCCGCTCCTGCGGGAGGTGG 1893136 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 1893197 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 1893258 29 100.0 32 ............................. CCGCTCGACCTCTCGCCCGTGGCCGACCGGCT 1893319 29 100.0 32 ............................. CCTCACCTCCCGGCCGTAAGGCCAGAAAATAA 1893380 29 100.0 32 ............................. GAGTACCCGATGACCGACCCCTCCGAAGAGAC 1893441 29 100.0 32 ............................. GCGATTCTGGCTCAGGCTGATGCTGACCAGTG 1893502 29 96.6 32 ..................T.......... TCCGGGTTCAGGATCAGGTTCCGGTCGGTGCT 1893563 29 100.0 32 ............................. GTCTTCATCTTCGCCAGCCGCTGCTGAATCTT 1893624 29 100.0 32 ............................. ATGGACAACGTCCTCTTCCTGCCCCGCCCCGT 1893685 29 100.0 32 ............................. TCGGTCCGGCCGGTGAGAGGGCGCGGGCGAGC 1893746 29 100.0 32 ............................. ATACACAACTAAGGGTCTTTCTCGTCCTCACT 1893807 29 100.0 32 ............................. GTCTCGTAGAACGTCTCGGCGATCAGCGGGCC 1893868 29 100.0 32 ............................. CGGCGTCCGCCGCGTCCGCCGGTCTCGGGGAC 1893929 29 100.0 32 ............................. CTGCTCTGGCACACGGTGCTCAGCTCGATGTC 1893990 29 100.0 32 ............................. AACGCGTCGGGCTGCTGGTAGCCGGGCCGGGT 1894051 29 100.0 32 ............................. TGGAGGACGGCCTGCTCGACCAGGAAGCGGTC 1894112 29 100.0 32 ............................. GTCGACACGGACGGCTCGGAGCTGGCCGAGCC 1894173 29 100.0 32 ............................. TCCTGTTCGGCTGCTACCAGCCGCGCGACCTC 1894234 29 96.6 32 .C........................... CAGGTGGCCGCGCCGGACCCGGTCGCTGTTCC 1894295 29 100.0 32 ............................. GTGTAACTTCCGCGCGGCCCGAACCCCCAGCC 1894356 29 100.0 32 ............................. GTGAACCCCGCCTTCATGCCCGACGATCGCCA 1894417 29 100.0 32 ............................. TGCTCTCCGGGGCCGGGCAGGACCGTCTCGGC 1894478 29 100.0 32 ............................. AGGATGCCGAGGTCCACGCCGATCACCTCAGC 1894539 29 100.0 32 ............................. CGGAGCGGCCCTCTGGCGTGTCCAGTGGTGGG 1894600 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCCCCGCATAGTCACCGACATCCAGCAACTCCTCGACCCCGACCGCACCTACGGGCCCCCCGACCCCGCGGAACAATTGGTCGACCTCTGGGACCCCGTAGCCGGCTCCGTGCCCGCCGGCATCAACCACGGAAGCCAGCCGTAACCCTGCCCACGGAAGGACACCGGCCATATCCTCGATGATCGTCATCTCAGCCACCGCCGTACCGGACCATCTCCGCGGCGCCCTCACCCGCTGGCTGCTCGAAGTCACACCCGAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGTGACGAACTCTGGTCAGCGGTCACCGCCTGCACCGACGACGGCATGGCAGTGCTCGCCCACCCCGCCGACAACGAACAAGGCTTCCAACTGCGAACCGCAGGCGCCCGCCGCCGCGAACCGATCGACTTCGACGGCCTCACTCTGATTGCCTTCCAGCGAGAAGGTCAAGAAATGGCAAACCCCGTCTAACGCGCCAGGTCACGAAGG # Right flank : GTCGTAGGTCATGAAGGCAGCGTGGCTCTCGGGGCGGGCGCGGTCTGGGCCAACGGTCCATACGGGGTGTGACCTAGGTCACTCGCTAGTGTTTCCAGATGTCGGGCTCGCCGCCCCGCCAGTCGATGAGCGCGGACCGGACGAGATCACCACGGGCACGCTCGAAGCCATACCGCCAGCCTGATCGCACGCACGAGAAGGCGCACGCTGGGCTACTCCAGCACGCCGAGGTCGCGTCTAGAGCACGGCCAAGATCAACGAAAGAACCCCCGGCCTACAGGAGGCCGGGGGCTGTAGATGGGTTCCGTTTCAGACAACGCGCTTGAAGCGGAGGCAACGGAGGAGCGGGAGGAGCGCCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1895484-1895813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015588.1 Streptomyces alfalfae strain ACCC40021 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1895484 29 100.0 32 ............................. GAGTAGGTGTCCGTGAGCGTGGGATGTTCGGC 1895545 29 100.0 32 ............................. GCGGACCGCGATGCCTGACCAGATGACCCGTC 1895606 29 100.0 31 ............................. GCCAGCCACCCCACCTACGGCAAGGCGACAC 1895666 27 86.2 32 ................--..A..A..... ACGATGAAGGGCGCCACCGGCCCCTTCGCCGA 1895725 29 96.6 32 ..........T.................. TAGTTGACGGCGACCAGGAAGGGGATGTCCTC 1895786 28 82.8 0 ..........A.T....A.....-....A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCTTCGTGCGATTGCTCTCGTGACGTGCGGACACTGCGGGGATCGCCCTGGCAGGGGCGGTCCCCGTCCGCGTTGCCGATGACGGTATGTGGTGGTTGCAGCGGTTGAGGTGGCCAAGGGCGAGCGTCGGCCATGGGGTCAACTCGCCCTGCCACCTGGGGCGTTGGTTGACTTACCCTAATCTTGAGGTAAGGCTATAGAGCGCTGACCTGCGGTTTCCCTCGACCCATCCACGCAGTCCACGTTAAAAGATCTACGATTGACTTAAAGTCGCCCTCTAGACCGAAGCGCCCACCTGCGCGCCGCAGACTGCGCGCGGCCTGCAAGCCGCACAACGCAGAGGCGCAACCAGTAGCCCG # Right flank : ACGGTCGTTTCGTTCCAACCTCGCAATTGATTGAGCTCATGGTCCGAGATCTCACCGGCGAAGCCACCATGAAGTAGTGCGAAACCTGGGCCAGGACCAAACACGAATCAACGGACTGAACGCTCAATTAGAAGCGCTAGGTCTGTCGCTCCTCACTCATCGACCCATCCGTGGGTAAATCGGACTAGCGATCTCAGTGTCACTGCATCGGGCACTCCCTTCGCTTTACGATGCCCTCAGTCGCGCTTCCTTCTGCTTAAATCTTTCTCCAGATACTATTGATCCTCGTGTCAGCCAAGCTGACGCCCTGGAGGGCGAGTGCAAGACGAAGAACGAGACTGGGCATTTTGGAGTCTCCTCGTCGCCATGCTCCAATTAGTGCTAGAAGTTATACGGTAGCTACCAACGAGACTCGCACGAGTCACCACCCCTCCCTTGCCATCGATTCCTTTCTCCGCATAAGCGGAGGTGAGCCGATTTAGGCAGACGGGAGATCTGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //