Array 1 6354-5786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXH01000064.1 Acinetobacter sp. 869535 ab869535.contig.63_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6353 28 100.0 32 ............................ TAATTAAAGACCAAGAAGGTGTTGAGGATAAG 6293 28 100.0 32 ............................ ACATCGTGATAGCGCGGCATACTCATGTGCAG 6233 28 100.0 32 ............................ CGATTCTTCAGGCGTTGGTAATGAATTGTATG 6173 28 100.0 32 ............................ TTAACGTTTCTGCTCAATGTCCTGCGCCTACC 6113 28 100.0 32 ............................ AGTACGTGTATTGATAAGTTTCTGGGAACCAT 6053 28 100.0 32 ............................ AGCAAGGTTAATGCGTTTGGCCTCTTCTACTT 5993 28 100.0 32 ............................ TCATAGAGTACACATAGTACAGGGTTAAGATG 5933 28 100.0 32 ............................ TGTTACAGCACTGCAAATGGTTGCCAATCCGC 5873 28 100.0 32 ............................ GCGACATTGATGCTGTCTCAAGTATTCGATTG 5813 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTTGTCATCGCATAGATGATTTAGAAA # Left flank : CTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATCAGGAAGCCTTCATTTAATAAGGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGATTACTTAAACGAATCCCACCTTTTTCAATATTGGAGTTAATCGTTTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATTTTCTCCATTTTTATTATTTAAACAATTTTTAACAGATTTTTTTAAAAATGAAAGTGATGCATGGCATTATTGCGACAAATTAAGTCGTAAGGACAACAGGTTAAAAATACTATATGCTTAATAGTTTTAGCCTAAGATGATTAGGTTAAACTTTGAATTTTTAGAAAATTAAATTTAATTCAATAGCTTATATTATTTTCTTAATTTGAAGGTTTAGATTCATTAAAAAGTCTATACTATTGTTTTTAAGAGCTTTGCTTTGACTTGGCTCTA # Right flank : ATCTAATTTCAATATTTAAGACGACATATTTTGTCGTTAAAAGGTAGTATTAAGTGGATTAAGACTGTCTCTTTTTAAAACAAAAGAATATATTTTTATTATATTTAAATTTTAATAATAAGTTATGCATGTCATTCTCATTTCCGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATCTTGGATAGCTATGCGATTCGTACAGGACATTCATCTTGGCAAGCACCCATGACCATGGATGGCTTAAAAGAAATTCGTAGTGCACTCAAAAAAGTGGCAACCCGACAAACTGCGGTAGCTGCGTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTGGGCGCAAAACATAAATTTGCACACGACGGTGCCTATCCGGTTGCATCGACCAAGAAACAGCAAAAATTACTGATGCTGGATGAATGGGTCAAAGTAAGTAGCTTATTGGCGGGGGCAGCAGGGGACATGCATGATATTGGTAAAGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTGTCATCGTATAGATGATTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11443-13873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXH01000064.1 Acinetobacter sp. 869535 ab869535.contig.63_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11443 29 96.6 31 ............................T TGCTGTGACACATGTGTGCCGCCCTGATAAT 11503 29 100.0 31 ............................. CTTGATGAGATTGAATCTGAGCTAAAGCTAT 11563 29 100.0 31 ............................. ACACCTATATGGCTCTAATCAAATTGAAATC 11623 29 96.6 31 ............................C ATTAACACAATCAGTTATGAGCCATTAAGCA 11683 29 100.0 31 ............................. AGTCGGGGAAGCGTAAGAAGAAGCCTAAATA 11743 29 96.6 31 ............................C TCCTGCATACACGCTTCGATTTCTGCTTTAA 11803 29 100.0 31 ............................. CCCCCTCAATCAATAGATTCTTTTTTGGTGT 11863 29 100.0 31 ............................. CAGTCCAGCTTGACTAGTAGGTCCGCATGTC 11923 29 100.0 31 ............................. TAACGACATCTATTCTTATTTCTTTAATAAT 11983 29 100.0 31 ............................. TGCGTCTAAAGATAGATTTGCCTGCACGATC 12043 29 96.6 31 ............................T CTTGAACGTGTTTCAAACTGTCTAAAAAAAC 12103 29 96.6 31 ............................T GTTGGAATTCTGAATGCTGCTGAAAGCTCCA 12163 29 100.0 31 ............................. TACGTCTAAAGATAGATTTGCCTGCACGATC 12223 29 96.6 31 ............................C TTCACATTTGCAATTACTGCCCCAGCAGCTG 12283 29 100.0 31 ............................. CCAGTACCAGTAGTAACTGATGGTGAAAACT 12343 29 100.0 31 ............................. TGATTTACCACCAGCACGACCACCATGGTAC 12403 29 100.0 31 ............................. TTACGTTCCGGACAATGAAAACCTATGTGCA 12463 29 96.6 31 ............................T CGAAGCTGAACGCCTTAAGTGCAGCCATATT 12523 29 96.6 31 ............................T TAAGTGCGGACAGCGTAGGGAGGAAGGGTGA 12583 29 96.6 31 ............................C ATTCCATTTCATACTCATGAGTAGAACCATC 12643 29 96.6 31 ............................T GAATGCCCTAAATGTGATGGCGAAGGTAAGG 12703 29 100.0 31 ............................. CCAATCCATTCATTTACTTCTTTAACTGAGA 12763 29 100.0 31 ............................. CGGTGACCCAGCTCAGGCTGGTAATGCCAGC 12823 29 96.6 31 ............................G TCATCGCTTGAAGCAATGATCAATGAGCGGA 12883 29 100.0 31 ............................. ACACGCCCAAAACCATTTGCGTACAATGGGT 12943 29 100.0 31 ............................. TGCTCATCGGCTTGTTAAAGGCCCATTCCAT 13003 29 89.7 31 ....G.......T...............T CTTGCTGTTTCTGAAGTTACTATGATGAACT 13063 29 93.1 31 ....G.......T................ TCCAGCCCGCTTGTATCTGTTTTTGCACTAA 13123 29 93.1 31 ....G.......T................ ACACAAATACTGTTTTTGAGATGCCTTATTT 13183 29 89.7 31 ....G.......T...............G TGAATGATAAAATAGATCAGTATTTACGCTT 13243 29 89.7 31 ....G.......T...............G TGAATGATAAAATAGATCAGTATTTACGCTT 13303 29 89.7 31 ....G.......T...............G CAAAGTTGTATGACTGCGATGGGTACAGAAC 13363 29 89.7 31 ....G.......T...............T TTTACTGTTTGCCTGTCGCGTTTATCCCCCA 13423 29 89.7 31 ....G.......T..T............. TTGCAAGTAATGTTGATGCAACACGGATTAA 13483 29 93.1 31 ....G.......T................ AACTCCTCAAAGCTGGATCAGTACCTGGCTT 13543 29 89.7 31 ....G.......T...............T TTTCTGCTCGGCCATTACTTCCAGTTTTAAC 13603 29 93.1 31 ....G.......T................ GACGGCTCTGTAGTAGTCATTGACGAAGTAC 13663 29 89.7 31 ....G.......T...............T GAAAGTATCCAGGTGCAGAAAGGATTATTAA 13723 29 93.1 32 ....G.......T................ GAACGCCACTAACATGACGATGAAAGCCCCCC 13784 29 86.2 31 ....G.......T.........G.....T ATTCCTTATCTTTCGGCTTGTCATCTATGAA 13844 29 69.0 0 ....G.T..TC....A..A.......TTT | A [13867] ========== ====== ====== ====== ============================= ================================ ================== 41 29 95.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACATTATACAAGCAACTCGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCATGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAATCTAAGTACCTCTTAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTATTTTAACTTAACTCTA # Right flank : TTTAAAGAGGCATAGTAAAAACTTCTATAAACAATAAAATTATTAAAAACAGAATTATTGTTTAATAAATCATCCAATTTCATCTACATTATTAAATTAAAAAGGTATTATGAGCCGAAATATGTCAGAATTTGATTAATTTATGATGTTCATGAGAAAACTGGGTAAGTCTCTTGACCTGGACTTGAGAAAATTAATACTTTTATTAATCGTATTCTGCGTATCTACACTCTTCTTTGTATCTTTAGGCGTGAGTTATTTAATCGTAAAAAACCAGTTAATCAGCAACTCTTTAGCGATTAACTCGGAATATGCAAATAAAATTGCCCTTAATACAGACAATCATTTTCAAAATATATTAAAAGAACTCAAGTACAGTGCTCAATCTTTGGGGAAAGACTTTAACAGTTTTGCGTTAAGAGAAGCAGAAGTTAACCGTCTAAAATACCAGTCGGATCACTATAACAGTGTAGTCATTGGTGATGCTGAAGGCAGACTCA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10933-5024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXH01000051.1 Acinetobacter sp. 869535 ab869535.contig.50_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10932 28 100.0 32 ............................ ATCGTTTTTTCATACGAGATTCGAAACGGACA 10872 28 100.0 32 ............................ CGTTAGCTTTTTCTTTTTTTCAATTTTTGCTT 10812 28 100.0 32 ............................ TATGACTTATTGATGAATAGCGCAATTGGACT 10752 28 100.0 32 ............................ CGTATGGAAAACAGTCCGCCGGGTCACAGATG 10692 28 100.0 32 ............................ AATCTTTTATTAAAATAAACAACTGTGCTAAA 10632 28 100.0 32 ............................ AAATACCGCTTTGCTGGGTCTGCAATATGACG 10572 28 100.0 32 ............................ GTCTGACCACAGTTCAAACAATTCCGGGCTGG 10512 28 100.0 32 ............................ TTTTCAAGCTGTTCATGGTACTCAATCAGTCG 10452 28 100.0 32 ............................ ATCTGGTCGCAATACTGTGCAAGGCGATATAA 10392 28 100.0 32 ............................ GTTTTGAGTCATCTTGACGTAGAAATCTGCTC 10332 28 100.0 32 ............................ GCTGTAAGAATGGTTATGTGAAGAACCGCTTA 10272 28 100.0 32 ............................ TTTTAAATCGACTGCGACTTTTGCCACGTTTG 10212 28 100.0 32 ............................ AGTCAGTCTCAGTTCACGGCGAATCTGGAACG 10152 28 100.0 32 ............................ AGTTCACGAAGATGATCACGCCAGTAATCGGC 10092 28 100.0 32 ............................ AGTATCATCAATCTGCACCTGTAACCCATGAC 10032 28 100.0 32 ............................ ACGTTTGAAAAGGTTTCAGCGTCATATTGCAG 9972 28 100.0 32 ............................ AGATCAAGCGTACTGGCACTGCAGGTGATACT 9912 28 100.0 32 ............................ AATTACAAAGTACTGGTGGTCGATGGTAGCGG 9852 28 100.0 32 ............................ ATCGGGATAGTCTCCTCCTCTCATGCGCTCAG 9792 28 100.0 32 ............................ ACTTTTAAACTGGTGGTTTTAACTTGATGCTC 9732 28 100.0 32 ............................ ATTGCTGTGTATTGGTCTTCAATGTACCCATT 9672 28 100.0 32 ............................ ATTGACTGGCACCAAATTTAAGGGTTTTTCAA 9612 28 100.0 32 ............................ AAGCAATTAGGGAAAATGATGGAAAATATGAC 9552 28 100.0 32 ............................ GAAAAGCCATATAAAGAACTTCGTCATGACGA 9492 28 100.0 32 ............................ TTGGTGCTATGACCGTCACGGCACAGGAATAA 9432 28 100.0 32 ............................ ACAAATCAAATTCATTTCTTATGCTGGTGGTA 9372 28 100.0 32 ............................ AGTCAGTCAGAATTTGTGGCGTAATGTCGTGC 9312 28 100.0 32 ............................ AACTACAGCCGTGCAGCCGGCGTTGGCACCAC 9252 28 100.0 32 ............................ AACGAATGGTGGTTTGGAACCAGCAAAAATAT 9192 28 100.0 32 ............................ AAAGGTGCAATATGTCTAGACCTTCACGTACT 9132 28 100.0 32 ............................ AAAATGAGTATCTGCACCCAGATTTGTTGCGC 9072 28 100.0 32 ............................ GATGTAATCAATGGTTTTGACTTCACGTAAAC 9012 28 100.0 32 ............................ TGTTCTGACGATCCTTTATTCCCATTCGAAAA 8952 28 100.0 32 ............................ AATCATCCTTCCAGTTATTTGCTTTGCACTTT 8892 28 100.0 31 ............................ GAGCAATCACGGCTGTCCTGATTGTGCTAAA 8833 28 100.0 32 ............................ AATAATATATAAATACGTTTATAAAATGCAAC 8773 28 100.0 32 ............................ ATGTTGAACTCACTCGGCAGTTGTAACCGCCA 8713 28 100.0 32 ............................ ACAGGAAACTTTAGTAGGCGCATTCGCTCGAC 8653 28 100.0 32 ............................ TTGAAATTTCGTCAGATGCAAAATTAGAGGAA 8593 28 100.0 32 ............................ GACCATCAAGCGCGTCAATCATCTGCCTGCTC 8533 28 100.0 32 ............................ AACTACAGGGAAAACAGACTACACGTTCAATG 8473 28 100.0 32 ............................ ATTATCTGATTCAAACTCATTAGACTTGTGTG 8413 28 100.0 32 ............................ TGCTTGATGCAGCGATAGACTGGCTTTTAGAT 8353 28 100.0 32 ............................ ACTAGACCCATCATCAAGGCGTGTGTCATCAG 8293 28 100.0 32 ............................ AGGAAGGTGAACAGATTGACGCAGCAGAGATC 8233 28 100.0 32 ............................ ATTTTTCAGACGTTGCGATTGAGAAATTGCAA 8173 28 100.0 32 ............................ AATGTAATCAATCGTTTTGACTTCGCGTAAAC 8113 28 100.0 32 ............................ TCCAAGATGCTTCAAGTATGAATATGATACCA 8053 28 100.0 32 ............................ TTACTGAAATCCCCGACCAGCATTGCGCCGCC 7993 28 100.0 33 ............................ CCTTCCTGCCCCGATCATGCCATCGGCATCCCG 7932 28 100.0 32 ............................ TTTTGATTAATGCGTTTTATCTATTGATTCTT 7872 28 100.0 32 ............................ ATGCAGATAATCAAGTGCATTTTGAGTGAGGT 7812 28 100.0 32 ............................ GCTATATGCGGCTTTTTAATAGAGTTTAGATG 7752 28 100.0 32 ............................ AACATCACCGGCAGACCATGTTTCAATATATG 7692 28 100.0 32 ............................ AATCATGTCTGATCTGCGTGAATCGGGTGCTA 7632 28 100.0 32 ............................ GTAGATTTAGGTGATTTGCTTGCGGGGTTGGT 7572 28 100.0 32 ............................ AGCCCGAACGGTATTGTTATGGCGTATGGGTC 7512 28 100.0 32 ............................ ACCTCAACATAAACACCATCGAACAACAGGGA 7452 28 100.0 32 ............................ ACTGTATGTATCTTTTTGCGGAGGATTTTTTT 7392 28 100.0 32 ............................ TGTTTATGGTTGAAAGGACTGGAGCCACTAAA 7332 28 100.0 32 ............................ AATGACTGAAATTCAACTAACAAACATCCAGT 7272 28 100.0 32 ............................ CAATGTGGATCTTGTTGTTGCAAACGTAAATG 7212 28 100.0 32 ............................ ATTCAGATTGAATCTTGATAATGTCCTGTTGT 7152 28 100.0 32 ............................ AGTTAGCGGCCTCCTCACCAGCTTCAGCTGCC 7092 28 100.0 32 ............................ ATTGGTCTATGGCAAAAATCGGGTTGCAGCAA 7032 28 100.0 32 ............................ TTTTAATTATTTTAAGAATGATCAGCAGCTTC 6972 28 100.0 32 ............................ TGAAAATGAAATGACAAAAGGACATATCAAAA 6912 28 100.0 32 ............................ GTGGTCTACAGGCTGAAAAATATCAGTTAAAT 6852 28 100.0 33 ............................ ATATAGCCGGCAAGGGCTTGCATGGATGTGCCT 6791 28 100.0 32 ............................ ATATCGAAACTCGGCTGAAATATCGCCCTCAT 6731 28 100.0 32 ............................ AGAATGATTAAGGATACACGCCGAAGTTGTTA 6671 28 100.0 32 ............................ TTCAACAGTCCGGCTGTCAATCTGGTATGTAA 6611 28 100.0 32 ............................ AAAAAGCTAAACCGATTGCAGTAGCTTCGGAA 6551 28 100.0 32 ............................ TCGGAATCCTGTTTCTAGTGTCTGGTTGTTCG 6491 28 100.0 32 ............................ TTCATCCTGTTTGTTTAGACCAGAAATAAATT 6431 28 100.0 32 ............................ ATTCAAAGCAAGCGCTTCAGCAGGTGCTTTGT 6371 28 100.0 32 ............................ TCTTTTTTACCTTTCATGTGCTTCACTGCCTC 6311 28 100.0 32 ............................ TATTGAGAAACTTTGGTACTGCTTTTTGTAGT 6251 28 100.0 32 ............................ AAAAGGCACGTATTGCAACGGAAAAATTGATT 6191 28 100.0 32 ............................ ACTCAGCATGATTGAAGTAATCACGGTTTTCA 6131 28 100.0 32 ............................ ATGAAATGTACGAGCAAAAGGATGGCGCTTAT 6071 28 100.0 32 ............................ ATAAAAGCATTGCGTGGCGTTTCGGTGCTTTC 6011 28 100.0 32 ............................ AAATCGAGGGCCAATACCGGCTTTTCGTGCCT 5951 28 100.0 32 ............................ AATTTTAGGGCTGTTGTTGGGTTACATTATCA 5891 28 100.0 32 ............................ AGATTGGTGAAAACCTGTGGGCAACGGCTGAT 5831 28 100.0 32 ............................ ATACTATCCATTTTCTGCACTCATGAACAACT 5771 28 100.0 32 ............................ TGAATGATCCTTTTCACAGTGCCACAATGAGC 5711 28 100.0 32 ............................ AATAGCTTTGCTGAAAACTTCAATAAAGAAAT 5651 28 100.0 32 ............................ ATTCAAAAAGGTTGTAACGGTGCTGATTATTG 5591 28 100.0 32 ............................ ACGGACTGCGTGTCGTTGAAATCAACGAAGGT 5531 28 100.0 32 ............................ TTGTCGCTTGACGCGCACCTGCGCCCTGTATT 5471 28 100.0 32 ............................ ACGAAGTTTGGCCAAATCACCATGAGTTCACG 5411 28 100.0 32 ............................ AGCTAATACAATCTTTTCTAAGCTATGTGTCT 5351 28 100.0 32 ............................ AACCGCGCTCGTCGCTTTGATTGCAGAAACAC 5291 28 100.0 32 ............................ GATATTTAGAGTTTCAGGAAAGTATGACGGCG 5231 28 100.0 32 ............................ TACAATTGGCACACCTCATATTATATTAAAAG 5171 28 100.0 32 ............................ ATACTGCAAGCCCATCTTGCGTTCTTCCCAGC 5111 28 100.0 32 ............................ TCAAGTTTTAATGATCTTGAGGGCTTTTAAGG 5051 28 92.9 0 .......................T...G | ========== ====== ====== ====== ============================ ================================= ================== 99 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CTGGACATTCGACGTTGGCTTGAGCGTTTAGAAGATTATGTACATGTCACTTCTATTCGTGAAGTACCTAATGATATTAAGAACTATGCCATTTATAAGCGTAAGCAAGTGAAAACCAATGCACAACGTTTGGCGCGTCACCGTGTAAAACGTGGGGATATTGGCTTTGATGAGGCATTAGCCAGATACAGCAATGTAGTTACGACAACCAACATGCCTTATATTGAAATGAAAAGCCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGCACTTATGGATTAAGTTCGGTGTCATCTGTACCAGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAGCTTATGATAGTGGTTTAAAACTTGGGTCTTTTGAGAGATTTAAGAGTTAAATCACTGTTATAACTTTATTTTTTGCTTTAAAATTGCT # Right flank : TATTATCTTCAGTAATACTTATGCAAACGAGAGTTTCTGTAAATAATTTTTGTAATAAAAAAGCCAATTATCTCAGTAAGATAATTGGCTTAAGCAAAGAGTTTGGCTATCCGCTTATTCTTCGATCATCCCAATAACACGGCACTACAATCAAATTATTTTCATGTAACCGAGACCATAATCTTACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGCAGGGTAGATTTCATATTGTCATAACGACTATACAAAACCTTATGCACCATCTCCAGGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCTATGACCAATAAATCAAAACTAGAGAAATGGTCGATAACTTCCTTCTCAGAACGTGAAGCATCTGACCAGGTGTCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGCGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //