Array 1 22012-19884 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYU01000015.1 Psychrobacter sp. I-STPA10 Contigs0_3_len:207147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22011 28 100.0 32 ............................ TGTTGATGCATCAATGACATCTAAAGCTGCTG 21951 28 100.0 32 ............................ CTAAAGCCTATGCCATAAGAGGTGTGGGTGAC 21891 28 100.0 32 ............................ TATTTCGCCATTTCGCGCGCGTATGCGGTTTA 21831 28 100.0 32 ............................ TGTGATGTCTCCAATTTTGCGCACCACATTGT 21771 28 100.0 32 ............................ AATTGACGCATGTTTGCAGAAGAAAGCGTGGA 21711 28 100.0 32 ............................ AAAATATTTTTTGACAGGAATCTTATTAGACT 21651 28 100.0 32 ............................ ACGAGCAAAAACGATATTCATCACCTAGCCCC 21591 28 100.0 32 ............................ CATTGTTGGCATATCTGAAACCCTATCATCAA 21531 28 100.0 32 ............................ ATACTATGACAAGGCAGACCGCCCACTGGTTG 21471 28 100.0 32 ............................ TGAGCACGATATTGTTACTCCAGCGACTCCAG 21411 28 100.0 32 ............................ TTGCTACCACCGGCAACACCATAAGTATTGTT 21351 28 100.0 32 ............................ ATAGCTACCCGCTGTTCCTCAAGTTGCGGCGC 21291 28 100.0 32 ............................ ACCACTGCTTACTGGGGTGGCGAAACTTCCAG 21231 28 100.0 32 ............................ GTTTGATGTATTAAAAGACCCGTCCGCTTATT 21171 28 100.0 32 ............................ ATCTGCTGTAAGTTTGCTGACTCGGATTTGCC 21111 28 100.0 32 ............................ AACGACTTTTTACTGGCTTTCCGTCATCTTCA 21051 28 100.0 32 ............................ GAACTTGCCATAGAGAGCATTAAAAAGGTACG 20991 28 100.0 32 ............................ TGCTGCATTAAGCTGGGTGTGGTCAATGGTTA 20931 28 100.0 32 ............................ AGGAACATATCTTCCGAGCGAAGATTTTTTGA 20871 28 100.0 32 ............................ ACCTGCTGGACACAGATGAGGTTTTCTTATAG 20811 28 100.0 32 ............................ GCCGAAAGCTGATAAGTTAGCCAGTTTGTTTG 20751 28 100.0 32 ............................ GCTCGTATTAATATATGAAAAAAATCCGTGGT 20691 28 100.0 32 ............................ TCGGTATTTGAATACATTATGATATAATGTAT 20631 28 100.0 32 ............................ AGTTTGGGTGCCAGGGGTTGCCCCCGTTACTG 20571 28 100.0 32 ............................ GTTGGGATGACTGTGGACAATCGCTTGTATCT 20511 28 100.0 32 ............................ TCTATAGCTATTATACCCTTTTTTTTAATATG 20451 28 100.0 32 ............................ TTCAGATGCCAGTTGTTTTAACTGCCCTGGCA 20391 28 100.0 32 ............................ TGATAACAGCTTTCGATTTGAATTTTTTATGC 20331 28 100.0 32 ............................ ACAGCCCGAAGTATTGCAAAATTTTGTTGGAA 20271 28 100.0 32 ............................ AGTAAAATCAGCACCAGATAGGTCAGCACCAG 20211 28 100.0 32 ............................ AATCCAGCCACCTCCCCCCTCGATGCTCTCTA 20151 28 100.0 32 ............................ TGATATTAGTGTAAATCGTCCGGACTGGGAGC 20091 28 100.0 32 ............................ AACAAGGCAAGGTTTGCTGACAAAATAGGCGT 20031 28 100.0 32 ............................ AATCCACGGTAATCAAACTTGGTATGTATCAC 19971 28 100.0 32 ............................ TTTGTGCTGTTGGACGTTATCAAGCAACTGTG 19911 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 GTTATCCATCGCATAGATGGTTTAGAAA # Left flank : GAGCAAAACTGGCAGCCGAACTCGATGCCAAACGCGCCATTCGTGATGGCGCAGAAGTTGCCGCCGCTATTTAAAATGGCGTAAAGTGGCTCAATAAGTTTTTTGTAGCCACTCCTGCCGACCGCTATTATCTGCCAGACTAGGCGAGGCGGTGACACGGTTTGGGGCGTTCCATCTAAGCGAGCGACCACCCCAAAACCTAGCCACCGCAACTCGCCTAGCCCGACAGGATAACCGCTAGCGTCAGGGCTAGCGGTCACATCTGAGTACTTACAACCATTTATCGTAGTTTGTATTTTGCTTATGGTTTTCGTTTCCAACCAAACCTACCTTACCCACCTTACTCATTTAAGCGACCCTAGCAAAATACCCTTTTTTTTACGCCTATAAAAATAATAATTAAAATCAATAACTTGAAAACAAAGAAAAAATAGAAGGTAAATTAAGGTTTTTTACCTTGCATACCTTGTTATTACTGACTTTTTAACGCTATAATTCTA # Right flank : TCGCCAAAGGGTAGTAACGAAATTATATTTAAGGTTATCTTCATAGCATGATTGGTGTTTTGCTTTAGCTATCAAAGCTATCTTTTATATCACTCCAATTTCGTGAGAAGTCATTAGTAATAGAAGAGTTCTCTGGAAAATAAAACTTATTATCTTTGCGAAAGAAGACGATATCATAAGTAGGTGAAGTTAAAATACAATCAGATTTATCTATATCCATAAATATAGATAAAAATTTAAACAGCTCTGTAACATCTATTATTTCTTCATATCCTGGAAAATAGTTCATGCTTATAAAGAGACAAGGGTATACTTCAAAATCAACAATACCAAATTCTGGAGCGTCGTAACTATAGGGTGTCTCCGAAAGGCAGCCATTGCTCTCATAAGTATCTATACTCGCAGTCATGTACTTTGTTTTTAAGCTTATTCCATCTGAATATCTTTCATGATTTTCAATTTTTTCATATCTTTCAATAGATAAGTAACTATGATTATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49899-46148 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYU01000026.1 Psychrobacter sp. I-STPA10 Contigs0_6_len:148211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49898 28 100.0 32 ............................ GCTAAGGCTAGCAAATTTAGAGCAAGTGTCAT 49838 28 100.0 32 ............................ CAGAGCATCTACACACGTATTTGTACGGATTC 49778 28 100.0 32 ............................ GTTTTTCTCAAAAACATTACCAATATGAATTA 49718 28 100.0 33 ............................ CTGACATTGATCAGGAAATATACGGAGTTCCCG 49657 28 100.0 32 ............................ AATAGTCATTGATGCCCTACGCTCACAAGTAG 49597 28 100.0 32 ............................ TCAGAGAAGTAACATCAAATAGCAATAAAATC 49537 28 100.0 32 ............................ TCATTACGTTGCCAACCACCTGTAGATGCCTC 49477 28 100.0 32 ............................ ATCTGCGCTATGACGATGATGCCAATGACACA 49417 28 100.0 32 ............................ GCAGTGTTTGGTGATGGTGTTGAATACAAAAC 49357 28 100.0 32 ............................ CTCACCAGTTTGTGTTACTGTGTCGTGCTCAG 49297 28 100.0 32 ............................ AGTAAGCGTGAGGTTGCTCAAATGGGTCGGGG 49237 28 100.0 32 ............................ AGGTACACAAACAAATGACGATGACTATAAAA 49177 28 100.0 32 ............................ GTTACAATTTGATTTAACTCCGATTTGTGATT 49117 28 100.0 32 ............................ ATTTCAGGGGGGTTATGCTGTATGTAGCGTTT 49057 28 100.0 32 ............................ ATCGGGATTTTTAATGCTAATGTTTTTCGGTG 48997 28 100.0 33 ............................ TATTTCTTTATCCTCAGAACTGTATCCCCTTTC 48936 28 100.0 32 ............................ CAATCCAGCGCAAAGTCGCTCAGATTGTTATA 48876 28 100.0 32 ............................ TTTGTGTGTAGAGAGTGGGATTTACAGGGTAA 48816 28 100.0 32 ............................ TGCTTGCACATAGTTGAGCACTGGCGCCATCT 48756 28 100.0 33 ............................ CATAACAGCCGGCAATTCAATGCCGTCAAATTC 48695 28 100.0 32 ............................ TCTATACAGCAACAGTTAAACTTGCTGAGACA 48635 28 100.0 32 ............................ AAAAGATAAAGAAAAAGATAAATTTGAGCTGC 48575 28 100.0 32 ............................ ATCAGCACGTTTTGAATTGGGTGGCAGTTGAT 48515 28 100.0 32 ............................ AATCCCGAATCTGAGACGCTGTATGACGGCAT 48455 28 100.0 32 ............................ ACTCTCTTCTAGTTCATGGAAAGTGTCATAAT 48395 28 100.0 32 ............................ GTGGTGCGGTGTTTTTATCGCTCACTGTCTTA 48335 28 100.0 32 ............................ AACTATTGCTAGCTGAGGCTCTTGTTTGTCTG 48275 28 100.0 32 ............................ AATACTGATTAACCCCCAGCGCTCTAGCTATT 48215 28 100.0 32 ............................ CCACCTCGCTATCTGCTTGAGCCAGCATATCT 48155 28 100.0 32 ............................ ATACCAATACTCGCGGCTGACGATTTAATACC 48095 28 100.0 32 ............................ GCAAAGGGTGGTGGTGATGTGCAGCTACCTAC 48035 28 100.0 32 ............................ AGCACTACTGCCCCTTGCCAGCAATCCAAGCA 47975 28 100.0 32 ............................ TGCTGACTCAATACTCATCAGCTCTTTTTTGG 47915 28 100.0 32 ............................ ACCATCACGTAGCTGCTCTTCTCTATATTGCT 47855 28 100.0 32 ............................ TTTTAAATTTCCATTTAAACCATCGCCATTTA 47795 28 100.0 32 ............................ AACAGATTGATAAGCAGATTCATATTTGCTAA 47735 28 100.0 32 ............................ AGCATGCCAAACACCGCCATTGCTAGCATGAT 47675 28 100.0 32 ............................ ATATAGCTAACACTCAAGATGCTAAATTTTTA 47615 28 100.0 32 ............................ TTTAGTTGAGCTTGTTAGAATTGACTTTAGCA 47555 28 100.0 32 ............................ TGTTTCCAATTCTCGACAAGGGGGCGGTCTGC 47495 28 100.0 32 ............................ TTATGAATGAAAATCTTAATATTCTGATGACA 47435 28 100.0 32 ............................ GACCCCCAACTTTTGGCACAAACTAAAATAGG 47375 28 100.0 32 ............................ TACTGAGCCTAATCCAGCTCGTATGTCACCGC 47315 28 100.0 32 ............................ GTCATAAGTATAACCCTGCTCCAAATACTTTT 47255 28 100.0 32 ............................ AGCTCCAGTTAAAACATCACGCAGCCAACCCT 47195 28 100.0 32 ............................ AATTTATTTGTAGTTAAGACAAACGATGTGAA 47135 28 100.0 32 ............................ ACATATCGGCAAGGGAAGATTTAGCTATGACA 47075 28 100.0 32 ............................ TGTAAAAAATGGTCAGGCAGTGTTGAGGACGG 47015 28 100.0 32 ............................ AAGTCCACCCCGAAGCCCTTTTGCAATCGAAC 46955 28 100.0 32 ............................ GTCAAACCCTCATCAATTATCATAGATACACT 46895 28 100.0 32 ............................ ATTCTCTATCGCTTTTGACAGCAGCTTCATAG 46835 28 100.0 32 ............................ TGATTTTCACATTTTATTTCGTGGTTTTGATG 46775 28 100.0 32 ............................ TCTCACGATTATTATTCCGCCTGTAATATAAG 46715 28 100.0 32 ............................ AATATCGACTCTTCATTTTTAATCGCCTTAAC 46655 28 100.0 32 ............................ TTCAGGTTCAGGTCTAAATTCAGGTTTTGGTT 46595 28 100.0 32 ............................ GCCCCAAATCATCATACGCAATACAGAAAATG 46535 28 100.0 32 ............................ CATGCTTTGCCATATTTGAACGTGAACCTGAT 46475 28 100.0 32 ............................ GTACACTTTTGCGCCACCGTGTCGACTTGTAC 46415 28 100.0 32 ............................ TTGTACCGTACGGCACAAGGCTAATCACAATT 46355 28 100.0 32 ............................ TGCTGACGGCTACTTCTTTGGACTTATCAAAA 46295 28 100.0 32 ............................ GTCTCTTGTGCGTTCGCTAAACATGAGGTGAC 46235 28 100.0 32 ............................ AAGCTCCGCTTATTTTTTGATAAATACCATTT 46175 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 63 28 100.0 32 CTTCAACATCGCATAGATGATTTAGAAA # Left flank : ATGATAAAGCGACAGGGTATTTGGTGGTGAAACGCTATCGCTTTAAGCCAGTTGAATTGCAGGCACAAACACTTGCTGAAAAACTCGGCATTAGCTATGATGAGGCAATGGTCACTGTGGCAAAACGACCACCAGAGATGCAATTACCTTATATTAATTTAAAAAGTGAAACAACGGGTGTTGCTTATAGGCTGTCCATCCTACAACAATCGGTAGATAGCCCTAATAAGGGCACATTTAATACTTATGGTCTCAATACCATGACCACGGATATTACTGTGCCTCATTGGTGACCATGGCAAACACAGTGACAAAGTTAGTCAAGTTGGCAAAGGTAATGACGAATTACCCAAAATTTGGGTATAAAAACCCTTTTTTTGAGCTATTTAAAAATTTACAATAAAATCAACCAATTATAGCAAGGTAAAAAATGGAGGGTAAAATAAGGGTTTTTGCCTTCCATGCCTTGTTATTATTGGTTTTTTAGAGTTATAATTCCT # Right flank : GGTGATGATACTATAAGGTGTGATAAGCAACAACATTATATAGTCGGCTCAATACAAAAATGTTACATCGTTAAACTCACTCACAGTACTACTTGTACACTTTCGCTCGTTTTCTTTATAACAGTATTATCTTGAATTGACTATGTTACAATTGGATATTTAGTCAGAATAACAAAACCAAAAAAGCTGTTCATATAATGATACGACAAACAATAATTGTTCAAACAGCATCAACTTTTTATTAGAGGATATATTATGAAAAAAGATATCAATTATTTTCGCCAAAAAATCAGGGCAATGGACTTTACACCTTTAACAGATGAAGAGCTAATAGTAGTAAATCAAAAGCATATAGACGCTGTTGAGAATGCTCGATTAGAAGGATATTATCAAAAATCAGATTCAAAAGAATTATTTGCTATGTTAAATGAGGAACGTGTACCACTAGATATACAAGAAACTATCGTATATGAATGGGTGGTATCTAATTTATGATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAACATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched CTTCACCATCGCATAGATGGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 84552-84224 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYU01000026.1 Psychrobacter sp. I-STPA10 Contigs0_6_len:148211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 84551 28 100.0 32 ............................ TCATCAGCTCTATACCAAAGTGGGCATTTTTT 84491 28 100.0 32 ............................ TGAGCGCGTTTTGGCACCGCAAATGTTAGCCA 84431 28 100.0 32 ............................ CCCTAGTCCAGTTGTATCAGGACTTGCCAAAG 84371 28 100.0 32 ............................ TTAAAAGACTGAAAGATAAAGACAAGTTCACT 84311 28 96.4 32 ...........................G AAAGCAGATGCTAAGACTAAGGCGGATGCGGC 84251 28 78.6 0 A..........T............TGGT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTTGCCATCGCATAGATGGTTTAGAAA # Left flank : TCCAATGCCATAAGGCAGGCAGTGGCTCGCCTGCTTTGGGGCTAGGTACACCTAAGGTCGCTGCCATACGTCGGACTAAGATTTCACAAATTAGGTCTTGTTTGCTTTCGGTATTGCCAATCCAGTCATTTAGGTTGACATCACTTTGAGTATCAGGGGTATTGGTGGTTTGATTATCAGTATTACTCATCACGGTTTCCTTGTGGTTGTTTGTGTTTGCTTAAGATGAATAAGGGTTAAATTAGAATAGACCCTAGTATGTCAAAAAAAATAGGGGTTCTAAATCACAGGTTTGTTAATATGGTGTTCGGATTTAATTAATGCCAATTTATTGTTGTTTAATATATGACGTGATGAACTACTAACAAATACTTAATTTTATCATTCTAAAAAATAGCTTTTAAAAACATATAATTATATAAGGATAAAAAATATAAACGTAAATCAGACTTTTTGCTGCTACACCATGCCATTACAGGGTTTTTAGTAGTATAATTTGA # Right flank : TTTATAAAACATCATTATCAGGTTTGGGTATACTCATATATACTTAACCATTAGGGTCTGTTGAACATTCACCCCGTTAGGCTAATATCTACAAGGGATAAAGCTACTTTTTACTTTCATGTAAAAATTGGCTAAATTTGCCTTATTCTGCGTTAATGAACTGGTTAATATCCCGATATTACCTGTGTTCATTGCCTTGATTAAGTCAAATTTATCTCAATTTTTCCTATGAAGATGAATGTTCAACAGACCCTACTAAAAGGAAGCTTATCACCATTCAACCGCCAACAATCAGCTTATATCTTATTCTACAATCACGGCTATTTAACATAGGTTTTCTATGCACTTTGACCTAACCGATTTACAGCTATTTTGTGCCATCGCTGATTCGCCCAGTCTTACCCAAGCCGCCAAACATACCTTTATATCCCCTGCCGCCGCCAGTACTCGTATTAAAAAGCTTGAAACACAGCTAGATACCCGCCTATTTTATCGTCATA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTTGCCATCGCATAGATGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63563-62235 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYU01000024.1 Psychrobacter sp. I-STPA10 Contigs0_13_len:114710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 63562 32 100.0 34 ................................ CAAATACATAATAGTTATGTTCTTTTAGTAATCG 63496 32 100.0 32 ................................ ATAGAAATAGTGTCAGTTTGTACCATCGGTAT 63432 32 100.0 34 ................................ ATTTTAAATTCCTTTGATATTACTTATGACAGGT 63366 32 100.0 33 ................................ CATTTTGGTCAGTTGATACGATTAAGCGCACAG 63301 32 100.0 32 ................................ ATATTAGTGTTGACATATAAGAACCATTGGTT 63237 32 100.0 32 ................................ TTGCTGGTCTGACCCTGCAATTAAAATTACTT 63173 32 100.0 32 ................................ CAGTGATAAAGATTTTCTCAAGCAACTCACGT 63109 32 100.0 33 ................................ TTTCAATAGCTTGGTTGATTGCAATTGATTGTC 63044 32 100.0 33 ................................ AGAAGCATCAGCTTTGGCAGCAATGGCAGAATC 62979 32 100.0 34 ................................ GGTTGCCCATTTTTTTATCACATGAAATGAGGGC 62913 32 100.0 33 ................................ AGAAATAAAGCCAAGTTTCAGGGGTAGGGTTGT 62848 32 100.0 32 ................................ TTTTGATGAAGATGAAAGCGATGGCGACCCAT 62784 32 100.0 32 ................................ AAGCTCTACCATCTCATCGTGACCAACTAAGA 62720 32 100.0 32 ................................ TTTCCGCTGTGTGCGATATGATATACCTGTCA 62656 32 96.9 32 ..............A................. ATGCCAGTATGTTACCTAATGAATATACGAGT 62592 32 100.0 33 ................................ TGATGTAAACAGCAAAAATTCTGAGCAAGATAC 62527 32 100.0 33 ................................ CTCAAACACATCATCAAGTATCGAGTTAAACAC 62462 32 100.0 33 ................................ ACTAGAAACTGATAAGACTTACCAGGAATATTT 62397 32 100.0 32 ................................ AGTAGTCGGTGTCTGTACTGGCTGATTTTGCA 62333 32 93.8 32 ............A........C.......... CCTGACGCTGATAAAATCGCTGAACGTCTTAA 62269 32 90.6 0 .......................C.A.C.... | TT,C [62238,62243] ========== ====== ====== ====== ================================ ================================== ================== 21 32 99.1 33 TTCGCACCCATCGCGGGTGCGTGGATTGAAAC # Left flank : GACGATGCTTAAAGCCAAACTCGAAGATATCATCGACCCCAGTGTCGACAGTCTACGCTACTACTATCTGGGTAAAAACTGGCAACGAAAAGTAGAACACATTGGTGCAAAACCTGTACTAGACTTAAACGACATGCTACTATTTTAACCTTATATGTCCTATAGTTGCTTCAAGATAAGACTGATACGAGGAAGCCGAGCGAAGCTGTACAAATAGTACTGTGAGCGAGGATGATAAAGTAGCAGTTTTGTATTAAATCAACTATGCCCAGCCCCACAAATGACCGTCATAAGGTCATTGCGAACCCATAGCATACATAAAAACACTGGGACACTCGCAATCGTGGTAAAACCCTATTTAACAACTTGATTTATATAGCCCCACCCCATAAACTGTCAACTATTGACTGGTGCAATACCAGTCAATATCGCCTTTATGAGTAACACTCGCAAAAACACAGGTTTTTTTCTAATGTTTATAACGAGTTAACTCATAGGCT # Right flank : TTTTCTCATAACGACATACCCCAGCAATGATGGTCTTAGCAACAACCCTATCATCACCCAGCATCATCAGCACAAATAGCTTTTCTGATAACGTCTGGCAATGTGCCAAACGGCGTTGCAATAAAGGCGTGGCATTCAAGTCTAGCACCACAAAATCTGCCTCTTTACCGACCTGCAAATTACCAATTTTATCGCTTAATTGTAATGACTGTGCATTGCCGAGGGTAATTTGATATAAACCTTGATAAGCAGAAAACGCATTGCCCAACAGTTGCTGAACTTTATACGCCTCCGATAACGTCGTCAGCATCGACAAACTTGTCCCCGCCCCCACATCACTGGCAATACTCACCCCTGTACATGCCAGTGTCTTAGGCAAATCAAACAATCCACTACCCAAAAACAAATTAGAAGTCGGACAATGGGCAATTTGCGTCCCTGTCTGCTGTAGGCATTGATATTCGTCTGACTGTAAATAAATACCATGCGCCAAGGTGCTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCACCCATCGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17375-18797 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFYU01000018.1 Psychrobacter sp. I-STPA10 Contigs0_1_len:239566, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================== ================== 17375 28 100.0 32 ............................ GTTGCTCCATCACCGAATAAGAATCACCCTCA 17435 28 100.0 32 ............................ ATTCTGGAGTGACAGGGCATTTAACAATCATC 17495 28 100.0 32 ............................ ATCGCTGCAATGCGTTTATTCATGCGTACTCG 17555 28 100.0 32 ............................ AATACTTTCGCCCCCATAGACGTTATGCCCCT 17615 28 100.0 32 ............................ CGGGCGATTATGCAAATACAGCGCGCGAACAA 17675 28 100.0 32 ............................ TGCTTTGCTTGCTGCGCTTAGAGTTAGCATTG 17735 28 100.0 32 ............................ TCACCCACTAATCTACTAGCTGCGTGATTATT 17795 28 100.0 32 ............................ AACCGATGCCCAGCACACTGCGATACAAACTG 17855 28 100.0 32 ............................ CACTTTATATGAGCAAATCGACAATGGCACAC 17915 28 100.0 32 ............................ CTCATCTGCGTTAGGATAAAGATTCATAATAT 17975 28 100.0 32 ............................ GTATTTGTCAGTTACAAATAGGCTGTCTGGTA 18035 28 100.0 32 ............................ TTATCCATGTCGCAAGCTGTCCGCCCTCCATT 18095 28 100.0 32 ............................ GTACCACCGTTTAAACTTAGAACGCACCTCGG 18155 28 100.0 32 ............................ TGATGATGTCATAGTAAATGCCCATGTCATGG 18215 28 100.0 32 ............................ TGTGAATTTACGAAGTTAAATCTTGACCGTTC 18275 28 100.0 32 ............................ GTCTCGGTCTCGGTTCTTACCAAGCAAATAAT 18335 28 100.0 32 ............................ ATTACCCGCTTTATACAACTTATGTTTGGGAG 18395 28 100.0 32 ............................ ATGTCCCATAACCATGATGCTCGTGAACAGCA 18455 28 100.0 32 ............................ GATGTATTGTCAAATCTTGAACAATACCATTT 18515 28 100.0 32 ............................ AATAGCAATAAATGAAACATAAGAGCATCTAA 18575 28 100.0 32 ............................ AGCGATCAACCAAGGCAGCAGTAAACTCTGGG 18635 28 92.9 104 ..........................GC AGCGTTAAAACTAATTGATAAAAACAGGCATATCAATTTTAGCTGCGCAAGGGAAATCCTTTAAATAGGATTTCCAGAAGGTACATTTCCGAGTGATTTTGGAT T [18659] 18768 28 85.7 0 AA...A...................G.. | GA [18771] ========== ====== ====== ====== ============================ ======================================================================================================== ================== 23 28 99.1 35 GTTATCCACCGCATAGGTGGTTTAGAAA # Left flank : TGCCGTTGATGCCAGTAGTTTGCGTACCAGTATTGAGCGTATTTATGCCATTGGTGATTGTATGTCTATAGATGGTGTGGCCTGTCGCTATGTTGCGCCACTGCGGGCACAGGCGGCTGCCATTGCCGATGATATTTTGCAAGAAGCGCATGCAGGCTATCAGCATAAACCACCGATGATTCGCCTAAAAAATAAAGCCATTTCGGTGATGGTTACTGGCTCACCTGATGCAAAAAAACCGTGGCAGACTAAGACACAAAGCGATGATGAGCTGGTGCTTGAACAGTTTGATGCAGAAGGTGTGGTAACAGCGACAGCAACCATTAAATCACCAAATTAATAGAGTAGAAATGGTGTTATATGAAAAAACCCTTTATTTTGCTATTTATTTAAAAGCTATTTAAAACAATGGTTTATGATATTACTAAAAAATAAGGGTAAAAGAAGGGTTTTTGCATTGTATGTCCTGTCATCACTAAATCTTTCATGTTATAATTCTA # Right flank : ATTGTAGTAAGTTTTTATCTGCATAACTTTACAATAAAAACTCCAGTACAAACTTACTACCAACAAAGCCGAGTGCCAGTAACACAAACGCAAAAATGGTCAAATCTGCGGCTCTACGCCCGCGCCAACCTGCCCGCCAATGCCCAATAATCATACCACCAAATATCAGCCATGAGATGATACTAAAGACCATCTTATGAGCAATGTGCTGTCCGATGATATCTTTGACATAGACAAAACCAAGCCCTAATGCAAGACTAAGCAACACAAAACCGACCAATATCATATCAAATAATAAGCCTTCCATACTTTGTAATGGGGGCAGTTTATTGACCCAAAAGCGATGTGCAGTTTTGCGTTTTAGCTCCCGTATCTGAAAACGCATAATCACCGCTTGTACTGCTGCCATGAGTAGGACACAATAGGCAGCAAAGGAGAGTAGAATATGTGCTTCAAGTCCACGACTAATGCCAACCAATGGGTGATATGGTGCAATGCCA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCACCGCATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //