Array 1 231768-230213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKU010000002.1 Salmonella enterica strain 105703 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231767 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 231706 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 231645 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 231584 29 100.0 32 ............................. TCTCAACAGGCACCACTTATTCTAACAGCGCC 231523 29 100.0 32 ............................. CGCCTTAAATTGCTGCCCGGCCTGGCTAACAG 231462 29 100.0 32 ............................. CATCAGATCCTCGCTATCTGGATATGGCTGCG 231401 29 100.0 32 ............................. TGTTGTTACTTTGTTCAGTCTGGCCCATAGCG 231340 29 100.0 32 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGA 231279 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCCTGACCGCCCT 231218 29 100.0 32 ............................. ACGCCCTCAAACACACGTATCTCGGCTACGAA 231157 29 100.0 32 ............................. TCTACAGACGTATTACAGCAAGGCGAAGCAAC 231096 29 100.0 32 ............................. CCCTGCGTCAGTGCGGCAAACGTCACCTCGTC 231035 29 100.0 32 ............................. GATTTATATCCATTTCCGCGAGCGAACCGGAG 230974 29 100.0 32 ............................. CGATCGGTATTCGACAAGCTCATCCAGCAGCT 230913 29 100.0 32 ............................. TGTGGGTTATCAACCTCTTATCTTGAGCAGAT 230852 29 100.0 32 ............................. TGGGATAAAGGACGTGCCGACACCGTTTTTTA 230791 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGATCCAACC 230730 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 230669 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 230608 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 230547 29 100.0 32 ............................. GGAGCACGGTAAACCACTGGCGCAAGGGCCGC 230486 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 230425 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 230364 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 230303 29 96.6 32 ..........T.................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 230242 29 93.1 0 A...........T................ | A [230215] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATTCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGAACTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249718-248653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKU010000002.1 Salmonella enterica strain 105703 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249717 29 100.0 32 ............................. TCTTCGTCGCTGGCGGTTCCCCAGTCCCCCTT 249656 29 100.0 32 ............................. ACAAACCCCTGTTTTGTTATCAACAAACTGTG 249595 29 100.0 32 ............................. TTCAATTCCGTTAATCCAGGCCTGCCGTACTG 249534 29 100.0 32 ............................. GCGGGCGCTCATGTCAAACGCCATCAGCGTTC 249473 29 100.0 32 ............................. AGGATATTCGTGTTCTCATTGATGCGATCTCT 249412 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 249351 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 249290 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 249229 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 249168 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 249107 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 249046 29 100.0 32 ............................. AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA 248985 29 100.0 32 ............................. CGCTGATTACTATACATAGTCAGCGGGCAATA 248924 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 248863 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 248802 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 248741 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 248680 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //