Array 1 4349-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOU01000012.1 Xanthomonas oryzae pv. oryzae strain YN03-06 scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4348 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 4282 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 4214 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 4148 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 4083 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 4018 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 3952 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 3887 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 3822 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 3756 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 3691 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 3626 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 3559 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 3493 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 3427 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 3360 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 3296 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 3230 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 3165 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 3099 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 3034 31 100.0 35 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATC 2968 31 93.5 36 AG............................. TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 2901 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 2836 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 2771 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 2706 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 2642 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 2577 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 2511 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 2445 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 2378 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2313 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 2247 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2182 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 2117 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 2050 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1984 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1917 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1851 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1784 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1716 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1651 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1586 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1521 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 1456 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 1391 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 1326 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 1261 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 1194 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1127 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 1063 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 998 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 932 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 866 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 800 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 736 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 669 31 100.0 34 ............................... CTGCACATACTCAATCAGGCCGCTGTCGGTGCGA 604 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 538 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 473 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 406 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 61 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //