Array 1 4347-4653 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPJT01000005.1 Ruminococcus flavefaciens strain XPD3002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 4347 36 100.0 31 .................................... AGTGCATCACCCTGAGTCCAGTTGAGCTCAG 4414 36 100.0 32 .................................... GAGAGAATATAAAGTCCAAGTGCTGGAGCATA 4482 36 97.2 32 ...........T........................ TGTAAAGAACGCCGAGAGTTATAAAGGTTGCA 4550 36 91.7 32 .......C.....G....G................. CCTGCATTCTCAACGTTATACTTCTTTGTGTA 4618 36 83.3 0 ..............................ACTTGT | ========== ====== ====== ====== ==================================== ================================ ================== 5 36 94.4 32 CAAGTAAACCCCTACCAACTGGTCGGGGTTTGAAAC # Left flank : GAGGGTTTTCCTGTAAGGATAGAGTATGATGAAAGAACCTGTAGAATATATATGATCATTTATGACGGCAACAGATTTGTAAAATCCGATATTTCAAAGCTTTCTGATATCTATATAACAGAAAACAGCATTGATACTATTCCTGAAATAAAGGATGATATGCTCAATAAGAAAGCATACCTCCCTGTTGTTTTTACAGTAACTGATGATAAAAACAGAAAGGCTATCGACAGAGCACTGCTTGCTTTCTCGGTATATGATCATGTTGTTGAACCCATAGATGAGAAAACTGCAAGATTTACTATTCAGTATTATACAATGGATCTTGATCTTCTTATAAAGGATATTCTTGCTTTCGGTTCTGATATAAAAGTAGAGTCGCCTCGTTATGTCGTGAAAAGAATAACAGATATTCTCAGAAAAGTTTAAAAAACTGTTGACTTTTGTACATGATTGATGTATAATACAATTAAAGAGAAATATACTTTGTATAGTTTCCT # Right flank : TTTTTAACTGAACAAAAAACAAAAAACTCATGCAGAAACAATGATCTGCATGAGTTTTTTCGCACTTTTCTCCCGTTACTTTTGTTTCAAAATGGTGTATAATATAAACATAAGAGAAGAATGCGGATATAACGAACAAAAATCGATTCTTATTTGCGCTAAATATATTTACAAAATCCAAAGTATGTGGTATAATATATTGTATGTGTTGTTAGTAATTCATTAATCACAAGATAATTATAAAGGAGTGATTTGATTATGATCGAAAAGAAGAAGTCATTTGCAAAGGGCATGGGAGTAAAATCAACACTTGTATCCGGTTCAAAGGTATACATGACGACGTTCGCAGAAGGAAGCGATGCCAGACTTGAAAAGATCGTTGAAGGCGATTCTATCAGATCTGTCAACGAAGGAGAAGCGTTCTCAGCTGAAATGGCTGATAAGAATGCAGGCTACAAGATCGGTAACGCAAAGTTCAGCCACCCAAAGGGCTATGCTGT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTAAACCCCTACCAACTGGTCGGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 12904-12144 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPJT01000015.1 Ruminococcus flavefaciens strain XPD3002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12903 28 100.0 33 ............................ TTCAATTGCAGCTATTCGTTTACCTTCTTCAAT 12842 28 100.0 33 ............................ TGTTGATTATGATGAGTTTGAAGCGCTTGATTA 12781 28 100.0 33 ............................ TAAAGCAAAGTCCCTACCAATGGTAGAGATAAA 12720 28 96.4 33 ..T......................... CTACGCAGAAGCAGACCCCAATGCCGCAGGTTG 12659 28 96.4 33 .................A.......... TAACGTCTGGGAAGCGTATCTCATATACAAAGG 12598 28 100.0 33 ............................ CGGCGAGTGGTCGGTTATCCTTGAACATCCTAT 12537 28 100.0 33 ............................ TAAATCAGGATGTAACCACATCGTTCTCGTTCT 12476 28 100.0 33 ............................ TACCATAGAGGCAAGGCGGAGAGACCTGCGGCA 12415 28 96.4 33 .............T.............. TGATGCTTTCAAGAGCAGTACGCCAAAAAACGG 12354 28 96.4 33 ..T......................... TAACCCACAGGGCATTATACAGCACCTTATGCA 12293 28 100.0 33 ............................ CGTTGATATTTGTGAAAAGTCGGTCTTGAAAAA 12232 28 96.4 33 ............T............... CTCGAAAGCCGCATCACGTCCAAGACGTTCAAA 12171 28 89.3 0 .A............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 33 CTATTCCCCGCACATGCGGGGGTGATCC # Left flank : ACGGTAGTAAATGGCAGTTCAGACTGACGGCAAATCCGACTATGCAATCAAAGCATCTGCCTGATAAAAACGGCAGAGGCAAAATAATCGCCCATATAACTACGGAATATCAGGAAGAATGGCTGTGCAGAAAGGCGGAGAAAAACGGTTTCTCAGTTGCTGAAGGAGAATATCTTGTAACTGCATCGAGATGGTATATGTTCAAAAAAAATAAGGAGCAGAAAAGCAAGGTAAAACTGCTTTCGGTCACATTTGAAGGTATACTCACCGTAACTGATGCCGATGCTTTCAGAAAAGCTCTTGTAAATGGAATTGGACGAGAAAAAGCTTATGGTATGGGACTTCTTACTGTTGCAGGAGGAAGAAAATGAACACACAGAGTGGAATGGAAAAGCCCATATTGTCTGAATTGCCTGCTATTAGCGACAGAATGACATTTTTATATCTCGAACATTGCCGTATCAGCCGTGAGGATGGTGCTGTTACTGTCAGAGATTCTG # Right flank : TAATATTACCTATAAACTTTGTTTATGTGATTTAATTGGAATTTTTGTTTAAATAGTACATCAATTGTATAGACAATGTGTTAGTAAAAATATGTACAAGTTTTTTATCAAAAGTCAGCGGTTGCTCTGACTAAGAAAATAAAGCATGTTATATATTGACGTATTTATATCTTAATGGTATAATGTTATTATGAAAACTCAACAATTAACAGCTGTTTGAGTAATAATCAGCATAGGAGAAAAATAATGGCTCGTTTAAAGATAATTAGCAATCCTTATGAGGAGATAATCTCTATAAGTCAGTTTGACAGTTCTACATCGGAATGGGAATTGGTGGACTATGAAAACAGCAAGCTTCATAGCGAAAAAATTGAAAAGGGAGTTTTTCCTTTTGTTGTTAAAAAAATAGCTGATTCAATATTTGAGGAGTTTCAGGCTGGCAGTGAACCTATTACAATTGTATTTGAAGGCACAGATGACGAACTGAAGGAATTGCAGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 208509-208812 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPJT01000007.1 Ruminococcus flavefaciens strain XPD3002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 208509 35 100.0 32 ................................... TTCAACGCACCGTGTCGAAATGACTACATCTA 208576 35 100.0 32 ................................... CCGTGATATGCAATCCAATCAAAATCTCTCAG 208643 35 100.0 33 ................................... CTGAAGTTCTCGTCCTCCTCGCAGCTACTCTCT 208711 35 97.1 33 .......C........................... CTCAACGCACCGTGTCGATTAAGCTAGGTCTAA 208779 34 77.1 0 .....-.C.....G....G.........G..CTT. | ========== ====== ====== ====== =================================== ================================= ================== 5 35 94.8 33 CAAGTAAACCCCTACCAACTGGTCGGGGTTTGAAA # Left flank : GTTTTCTATAACCAGAGAATCCGGCATCAGTCTTAACCTGCTCCATACTGTATTCTCAGACATAATTTATTGAACGTTATCAGAGTATATCAAAGAATTATGTCATAAACGTTATCCGAATATCAATGCAACTAATTATTATAAAGCAATAGAGCTTGCCGATGAAGCGAAGCATGAATACGATGAAATAAAAAATGAAGTTAGATCTCTTGAAAAAGAAATACGTGAACTTAGTGGCGCTTCTCTTGTTTTGGATAAAGGTGATGATCCGGTTTGATAATCAAATTAAGTTACTAAAATATTATCATCTCTGTAATTTTTCTCACTTTTTTACCGTGAATTATATAAAAAAACATGATATAATACAGACAACAAAGAAAAAACAACCTATATAGTATCTAAATCAGTCCAGAATCAACTTTTTTATGAAAAGCGCTTGACATTTGTGTATTATTGATGTATAATACAATTAAAGAGAACTATGCTTTGTATAGTTTCCT # Right flank : ACTTCTAAAACAAAAAAGCTGCCTGAGCATTTTTCAGCTCAGACAGCTTTTATTTGATATAATTTTGTTTTCTCACTTTTTTTACTTGCATTTACCTCATTAATGGTGCATAATAGTTACAGAGAAAGGAGAGATGCTATGATAAGGATCAGCGGTGAATATACAAATGCTTTAGTTTATACAGGCAACATTGATGAATGTGCTTACTCGCAGATCATGGAACTTTGTAATCATTTCGCTTTTAAGAATGCTGAAGTAAGGATCATGCCCGATTGCCATGCAGGAAATGCCTGTGTTATTGGCTTCACAGCAGTTCTGAATGAGAAGAGGATCATTCCGAATATTGTGGGCGTCGATATTGGATGCGGAGTTATGGCTACACTTTTCAGAACTGAACAGGATATTGATTTCAAGAACCTTGATAACTTTATCCGTGCATCTGTTCCAAGCGGAATGTGTATCCGTGAGAACCGTTATACGTATATTGAACCCGAAATTAT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTAAACCCCTACCAACTGGTCGGGGTTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.40,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //