Array 1 28-606 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUU01000208.1 Escherichia coli strain KCJK8522 NODE_208_length_7552_cov_2.946532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 89 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 150 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 211 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 272 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 333 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 395 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 456 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 517 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTAAAAACAGATATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1222-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUU01000011.1 Escherichia coli strain KCJK8522 NODE_11_length_45151_cov_3.342351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1221 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1160 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1099 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1038 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 977 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 916 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 855 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 794 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 733 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 672 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 611 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 550 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 489 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 428 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 367 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 306 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 245 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 184 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //