Array 1 613159-614812 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKG01000001.1 Akkermansia muciniphila strain GP12 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 613159 31 100.0 34 ............................... GACAGCGTGGGGCTGAGCAACGACTTGCTGAACG 613224 31 100.0 33 ............................... CGTGGATACGTGCAGGAGATGTCTGACATTTAC 613288 31 100.0 34 ............................... GTGCAAGGCGACTACATAGCCGTTCCATTTCAGC 613353 31 100.0 33 ............................... GGAGCAGAGGACAAGGCTCCCGTAGCCCTTGAT 613417 31 100.0 35 ............................... TGTATTACATTTGAGGGATGATGATTCTGGAGCGG 613483 31 100.0 34 ............................... CCGTGAAGGGGTTGATGGTACTCAGAAACTTGTC 613548 31 100.0 34 ............................... CGCCTGCTGTTGAGCCTGCCAGGACTGACGCATG 613613 31 100.0 34 ............................... ATCAGGGTCAGGGAGTCGGTTGTCATGCCACAGG 613678 31 100.0 34 ............................... CTCTTCTACGTCACTCTCGAAATAGTCCTCCCCA 613743 31 100.0 36 ............................... AATATATGTTTGAACAACTTGCAATTTCTTCTATTG 613810 31 100.0 33 ............................... CTTTCTGATTCTGGCTTCTTCCATTGCCTGAAT 613874 31 100.0 34 ............................... CGTCCAATCAGCATCAAGGCGCACTTGCAACCCT 613939 31 100.0 34 ............................... TTTGTAACCCCTGTTATTATGCTTTTTTTATTAA 614004 31 100.0 33 ............................... CGCTTCAATTTCGCTGGGAATCATACCGGGGAC 614068 31 100.0 33 ............................... CTCTGCACTGATAGCCCGGTAAAGCACCCTCAT 614132 31 100.0 34 ............................... CCCCGAACGCCTTTCTTCTTTAACGGTATTTTTG 614197 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 614262 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 614328 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 614393 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 614458 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 614524 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 614588 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 614652 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 614717 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 614782 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 26 31 99.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 135452-135743 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKG01000002.1 Akkermansia muciniphila strain GP12 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 135452 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 135517 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 135582 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 135647 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 135712 31 87.1 0 .....................A..A....TA | G [135725] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGG # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 423763-425090 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKG01000002.1 Akkermansia muciniphila strain GP12 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 423763 31 100.0 34 ............................... ATTGGTATCCTCCGGCATGTTCTTGACGTAGATT 423828 31 100.0 34 ............................... CTGTCTGCAACGGGTCTTCCGGGTTAAGACGGAT 423893 31 100.0 34 ............................... AGAGTCCAAAAGATACTGTTTTGCGCGGCTGGAA 423958 31 100.0 34 ............................... CTTAGTAGTTCCTCAGCCTTGGATTGCATTGCTA 424023 31 100.0 34 ............................... TAATAGTTGAATGTTAGTGTGTTGTTATTCTCCG 424088 31 100.0 34 ............................... CATCTGGGCGGCGGATTGTTCGTGCATGACGGCA 424153 31 100.0 34 ............................... CTCAACTTCACGCGCTATGTGGTAATCCTCCATA 424218 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 424283 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 424348 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 424413 31 100.0 34 ............................... TTCCGGATGGCACGTCAACAACGGTGGGCGTGAT 424478 31 100.0 34 ............................... CGGAGGCCCACGGGCGCCGGGCGGCTGATTATCG 424543 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 424608 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 424672 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 424737 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 424802 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 424867 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 424932 31 100.0 33 ............................... CTGTGTCAGGGTCCGTGATGGTCCTGGTTTCGA 424996 31 100.0 33 ............................... TCCTCCAGAAATTCCACAAAGTCCTTCTGGCTC 425060 31 87.1 0 .........A................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 21 31 99.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : TGTCGCAGACTGAACGGCCTACTATCTCTGGAATGAGAAGGAGCAGTTGGCTATAACACTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTTGTGAAAAGAAACAGATCAGAAGCCTTCAATCATTTCCGGGGTTAACCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGACTTCAATGGAATGGTGAACCTTGGCAGAAGAGTATTGACCGCTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTACCTTCCGGTCGTGCAGAGGAGGCATCTCCTTCAAACATCTGAGGAAGCGCTTGTTTGAAAATGGATGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGCGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTACTGCCGTCTCCGTCATTGCTGACGCTTTTCGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 433563-434664 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKG01000002.1 Akkermansia muciniphila strain GP12 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 433563 33 100.0 33 ................................. GTGGCGGCTAGGGATATTTTCTTTCCGTTACTC 433629 33 100.0 34 ................................. CAGATACCAGCGTGCTTTCTTGAGGTCTTCAATA 433696 33 100.0 33 ................................. GTTAAACTACAAGTAAAACAGCTGTCAAGAAAT 433762 33 100.0 33 ................................. AAGTTCAAACTGTTGCATCACCTTGGTCATCAG 433828 33 100.0 34 ................................. GTCCCGGTAGCTGTAGTAGGCACTGGCACTGGCC 433895 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 433963 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 434030 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 434097 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 434164 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 434231 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 434298 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 434365 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 434431 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 434498 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 434565 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 434632 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 17 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //