Array 1 126-2669 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOD01000012.1 Azoarcus rhizosphaerae strain CC-YHH848 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 126 36 100.0 30 .................................... GGCAGTTCTCCAGCAGCACGACCTCGCCCG 192 36 100.0 30 .................................... CGGCACGTCATCGGGCGTGTACTCGTCCGG 258 36 100.0 30 .................................... GCAGGGTTCGCGTCGGCCCTCCGGCGGGCG 324 36 100.0 30 .................................... CGCGCGCCCGCGGGAAGGCGCGGGGCCAGC 390 36 100.0 30 .................................... CCGCCCACAGCAGCTACCTCAAACGCTAGG 456 36 100.0 30 .................................... TGGACAGGCAGGGACCGTCGAGCGCGATGG 522 36 100.0 29 .................................... GGCGGGCGATGGGAAACGGTTGAGCGCGT 587 36 100.0 30 .................................... CGTAGGTGATGCACTGGCGCTCATACTCGG 653 36 100.0 30 .................................... AGTGTAGCGGCCGGCGCTCTTCGCCAGCTC 719 36 100.0 30 .................................... ATAAAACTCGGCCTGCGTCATCTCGCGGAT 785 36 100.0 30 .................................... TTGTCGGGCGTCATGGCTTAATGCTTCGTG 851 36 100.0 30 .................................... TTCGACGTGAAAAGCCATTTAAAGAATTCG 917 36 100.0 30 .................................... TGCGACAGACGGGGCACAACATGCGCACCT 983 36 100.0 30 .................................... TCTGTGGATGCAGTAAGCCATTGCTCCCTG 1049 36 100.0 30 .................................... AGCTCGAAGAGCATCCCCACGATTCTCGCT 1115 36 100.0 30 .................................... CTGTAAGGCTGGATTTCGCACGCGGCAGAA 1181 36 100.0 30 .................................... TTCCTGCCTTCCGTTGCGCTCGCCGCGAAC 1247 36 100.0 30 .................................... GGTTGGTGCGCGACAGCTCAAGCACGTCGA 1313 36 100.0 30 .................................... CTTCATCGCTCAGCTTCGCCAGCGTGAGCG 1379 36 100.0 30 .................................... TCGAAATCATCCAGGCCGGTGAAGAAGGCG 1445 36 100.0 30 .................................... CATATCACGCATGTAGGCCAGCGTCTTCGA 1511 36 100.0 30 .................................... CCCGGAGGACAACCAGCTCATTTGGTTGTA 1577 36 100.0 30 .................................... GCGCAAGTACAGCAGCGTCGATAGCGCCAT 1643 36 100.0 30 .................................... GGTGTGCTTCAAGCCCCTGGTGCTGGGCGC 1709 36 100.0 30 .................................... TTCGCGCAGCGCGTGCGCCTGGTGGGTACG 1775 36 100.0 30 .................................... GTGCTCGCAGAGGTGACTCCCCTGCGCTTC 1841 36 100.0 30 .................................... TTGAGCATTTCACACCCTCCTACCGAAGAA 1907 36 100.0 30 .................................... GTCGTGCTGATAGCGAACAAATCCCGCCTC 1973 36 100.0 30 .................................... AACAACTGGCCGAGGTGTCTAAATGATTCC 2039 36 100.0 30 .................................... ATCGTGCTGATAGCGAACAAATCCCGCCTC 2105 36 100.0 30 .................................... ACGTCCGCATACAGTTCGCGGTTGCTGCTG 2171 36 100.0 30 .................................... GTCTTCGGGGCCGTAGAACGCGGCGCTGCG 2237 36 100.0 30 .................................... CGACGCTGTTCACGGTGACGCGGCTGGCGG 2303 36 100.0 30 .................................... CCTGCTCGACCAGGCCAACGATGACCTGCT 2369 36 100.0 31 .................................... CGCCGCCCTTCTGGCTTGCTATGACGATGGT 2436 36 100.0 30 .................................... GTTCCTGGTGCGCTTCCTCGTTGGCCTCGG 2502 36 100.0 30 .................................... CTTGCGCAGGGTGTAGCCAAAGGCCGGGTC 2568 36 100.0 30 .................................... GGCGTACAGGCGGGCGATGACGTCTTCCGG 2634 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 AGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : GCGTACTCCAACTCGGAAAAGCTCGATTGCATCGGCCCACGTCCTGTCATTCGAACACAGCCTCCATTATCTCAAGCGCATCTCTGTGCCGGGGCGCCGGCGGAGGAATAAATCAGCGATTCCCTA # Right flank : CCTGCCGGAGAGGCCATGTCCTCCGCGAAGAACGTGTGTATCTGCGGGGGGGAGGGAAAGCCCCTACCCTACCCTACCCTACCCCGCCTCGCATGCCACACCCACCGGCATCTCCAGTTCCCACACTTCACGCAGCACCTCCATCAGTGCGCCGATGACCAGATCGCCGGCGCGTTCGCGCAGAACGGCGAACTGCAGGGGCACGGAAGGTAGCGGCACGGGGAGTTCGTAGGCGCTGTCGGCATCGCCGCCGATGACGCCGGCGCGCACGATGCCCAGGCCGACCCCAGCACGCACCAGTTCGATCATTGCGTCTTCCTGGTCGGCGAGCAGCGTGCGCATGGGTTCGCAGCCGTTGGCATGGAAGAGCGCGTGCATGACCTTGAAATAGGCGCAGTCGGGCGAGGTGAATACCCAGGGCAGGCGTGCCAGTCTGGCGATGTCGACATCGGTGATGCGGGCCCTCATCGCCTTGGGTGCGGCGACCACCAGGGGTTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 75527-73274 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSOD01000013.1 Azoarcus rhizosphaerae strain CC-YHH848 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================= ================== 75526 28 100.0 32 ............................ ATTCGGGCAGGCGCCCGACGTAGCCGATGAAC 75466 28 100.0 32 ............................ TGACTATCGGCCCGCCCCGTCTGTCCCTGTCG 75406 28 100.0 32 ............................ ACCCGGGAAACGAGGAAGAACGCGGCCAGCCA 75346 28 100.0 32 ............................ GCCCGCAAGGTGTTCGCCACCAAGGGCGACCC 75286 28 100.0 32 ............................ TCCGACAGCAGGTAGTGGACGCGAGTTTCGTC 75226 28 100.0 32 ............................ TGAGCGAGGTCTTCGCATGATCGAGACCACCC 75166 28 100.0 32 ............................ GAGTGCAGCGCCGGTCCGGGATCATGGGGATT 75106 28 100.0 32 ............................ ATCCCGGTGCGTCGCGGTGGCGGACTCCAGAT 75046 28 100.0 32 ............................ CGGAGAAAGATTGCATCTGTTACTACGGCTTC 74986 28 100.0 32 ............................ AAGAAGGCTGCTTCGGCCCCGTCCTCGTAGCC 74926 28 100.0 33 ............................ ATTAGCGGATTAACGCTGTTGCCGCACATCCGC 74865 28 100.0 33 ............................ AAGCCAGAAGAGTGACCGCCAGAGTGAAGAACT 74804 28 100.0 32 ............................ GCCGTCCGCGTCCAGATCGGAGACGCCCTCGA 74744 28 100.0 32 ............................ TCGCCACTGGCGGCATCGTCATCGCCCCCAAG 74684 28 100.0 33 ............................ TCTACCTGGGCGACTGCATCGAGGGTATGCAGC 74623 28 100.0 32 ............................ TCGATCCTGGCCAGCGGGGGCCCCTGTCATAA 74563 28 100.0 32 ............................ ATGACGATAGCGGCCCGGTATATCTAGAAGAC 74503 28 100.0 32 ............................ ACCAGGTGCTCGGTCTCAATGAGCGCCGGCAG 74443 28 100.0 32 ............................ CGTCGGCCAGGCCCTGCGCAAGAAGTACAGGC 74383 28 100.0 32 ............................ ACTAGCCGCCGCCAGTACCCGGCATCTCCGCA 74323 28 100.0 33 ............................ TCGCCGGTGGCCCGGCTGTTGCGCACCACGCCC 74262 28 100.0 32 ............................ AGAACGAGACCGGTTCGGCATCGTTGATCGCG 74202 28 100.0 32 ............................ TTGCCCGTGTTGTGCGCGTAGCCAGCGGCGAT 74142 28 100.0 32 ............................ ACTCAGTTTGATCTGGGCGGTGGGGCGAAACT 74082 28 100.0 32 ............................ ACATCCTGACGCTTGCGGCCGGCGGGGAAAGC 74022 28 100.0 32 ............................ GGGGCGCCACAAGCGGGGTGATGTCCTTGCCG 73962 28 100.0 32 ............................ CGCCGGACACCCAAGCCGCATCGCTGTGGTTG 73902 28 100.0 32 ............................ CGGTGGAGAAGGCCCGCCGCACCGCCGTGCGC 73842 28 100.0 32 ............................ ATCCCCGGCCGGCGCATCCGCGGCTACCACAT 73782 28 96.4 32 ....................T....... GAGAAGGTCGGCAAGAGCCGCGCCTACATCTA 73722 28 100.0 32 ............................ GCCGAAGTCATCGGCCGGCGGCGCGTTGAAGC 73662 28 100.0 151 ............................ TCTCGAACACCTGCCGCTTCGGCGGCCAGACGGATCACTGCCTGTACGGCAGTGATCAATGCCAGCTTCAGCGCCACCGTGCGCTGACATTTCTGAGCTGCCTGTACGGTAGTGATCCCGGTCGTGCTCGATGCTGGCCGGCGTGATGCTT 73483 27 85.7 32 TC.G..........-............. TGCCTAACTGCCTGGATACCTTGATTTGCTCC T,G [73473,73479] 73422 28 100.0 32 ............................ GTAGAGCCAGCCCTGCCACATGGGGCCCCTGT 73362 28 100.0 33 ............................ GGCCTGCTGCAGCAGCTCGCGCTGATCACCTCC 73301 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ======================================================================================================================================================= ================== 36 28 99.4 36 GATCACTGCCGTACAGGCAGCTCAGAAA # Left flank : AGAGCCTGGAGCGCCTGATGCGGATTGCCTGGCTGCAAGGCATGCGGGATCACATCGCAGTCACGACACTTGCCCCGGTGCCCGAAGAGGTTGCACATCGTATCGTGCGTAGGGTCCAAGCAAAGAGCAACCCTGAACGCATACGGCGTCGGTTGATGGCACGCAAGCATATGGGGGCCGATGAAGCGCGAGCGACGATCCCCGACTGCGCCGCACAACGGCTTGATCTTCCATACGTCGAAATTGCCAGCCGCACGACCGGCCAGCGCTTCAAGCTTTTCATAGAGCATCAGGCACTGCGACAGACTGCCGTACGCGGTCCGTTCGGAACGTATGGCCTTAGTGCCATTGCCACCGTACCGTGGTTTTGACCCTTTTTTCGGTGGGTTCTTTAAGTACTAAAAAAACAAAGGGTTATGAGAATGGTGGTTAGTTGGGGCAGCGGGCGCATTTGCGCCCGTTTTCCTTAGCAATTAAGGTATTAGCGGCTCGAATGTCTA # Right flank : ATCAGCGTGACCACATCGGCGAGCAAGATGGAAGCACTCACCGCCAGTCAAATGGAACTGATAACGTGTTGGCGACTTGGTCTTCCCGGCAGCCTGTTGCACGTCTCGTGTGCTGGAACTGTCTATCCAGACCAGAGTCTTTCAGCTTTGTGGGACTTGTTCTTCCTGTTGATCGATGTGCCACCCAGGAGCCTGTAATGAAGAAGTCAAAACTCAAACCCCGCAACCCCCTCGTGGCGCAGGTGCGTCGGCGTGGCGGTGGCGGGGTGCATGAAGAATCGTTCAAGGCGCGGCGCAGCCGCGAGAAGGCGGCGCTGCGGCGCGAGGTGATGGGTGGGCGCGGCGGGGAAGGGCGGGAGGCCGGACGAAAGCGGATCGCGGTGGTGGCGGTGGGCTTTCGTCCGGTTTTCCGTTCTGCGGTTCAGGAGCCGTACTTGACGGTGCAGCCGTAGGCGCGGGTGACCGGGTTGGGGACGGGCTGGCCGGCCTGCAGGGCGGTG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCACTGCCGTACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //