Array 1 3762-4430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAR020000028.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXT, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3762 35 100.0 33 ................................... GGATAGTTAACATTTTATCAGCGTCATCCTTAT 3830 35 100.0 37 ................................... AATTCTATCAGGTATCCGTGAATTTTCTGCTGATACT 3902 35 100.0 37 ................................... AGCCTTAATTTTGTTAGTATTAATTGCAATATTTGTT 3974 35 100.0 38 ................................... TCAAGCATTCCCTCTTTAACCCATCCATTCCTGATGAG 4047 35 100.0 35 ................................... TCTCCTAGGTTTTTGTTATGGTGTGTGTTCTTCCC 4117 35 100.0 35 ................................... GGACTAATGCATTAGTTATGACAGCCATTATTTAT 4187 35 100.0 35 ................................... ACTGTCTCCCTATCTATATACATTTCTGATGAGCT 4257 35 100.0 34 ................................... TTAGCAGATGATACAATCTTAAACTTGTTTCTGA 4326 35 100.0 34 ................................... TCTTGCTTGGCTCGTATCGATGTGCTTGTGTATT 4395 35 82.9 0 .................A.....A...C...C.GT | A [4425] ========== ====== ====== ====== =================================== ====================================== ================== 10 35 98.3 35 GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Left flank : CATTAAATGAAATACTATGTTTTTTGTTTTGACATTGCTGATAACAAAGTGCGCTATCGTGTCAGTAGAATTTTGCTAGACTATGGCGATAGGGTACAAGGCTCCGTATTTGAATTGGCACTAAAAAGCCATCACGATATTACCAAGATTCTAGAAAAAATAAATAAAATTATTAACCCAATGACAGACGATGTAAGATATTATTATCTCAGCGGAGAAAGTCTGCGTCGCTCAAAAAACCTACAAGGCGAACGAGTCAAGCAAACCCCTGCTATAATTATTGTCTAATTCGGCAAGCATGATAAAAAAATAGTAAGTTAAGTTATTTCATTAAAAATCAATCACTTAAGTTTTTCGCTTGCCGAATGGCTTAACCACAATACTTTAACCAAATTAAAAAGGTATAATATGCACAGTTTCACTAGATTTTCTAAAAAATCACCGAGGTTGCCGAATTCGCTTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTACA # Right flank : TGCTTATGAGATAAGCAAGGTTTAATAAACTAAACAGAATTTTTTTAATTTTGATATTGCCACTGAAGTTAGAAATTTTGGCTCTTTAAACTTTTTTACCTAGATGATTTGTTTAATAAATATAGCAAGGTTTGTAATAAAATTTAAGAATATATTTTTTAGTTTTTTACAACAAGTAAGCACTTGTGTGATCTTATCGAAAAAGCGGTAAGTGGTTTTTTATCTATTTCTTGCGTTATTAATGACTGATTGAATCTTTCTCAAATCGTCAATATTCGTTTCAACATAACCTAAAGTTGTTTTAATGTCAGAATGACCAGTGATTTTAAATGGCATTTGCTATTGGTAATTTTTGTCGCTGTTGTGTGTCTCAATCTGTGGGGAGAGTCAAGTGTGCCAATTTCTTTTCGACCATTTTGTGAATAGTCTTGAGATTTGATCTTCGTTTATTTGTTCTGCTTTGTAACTGTTTAAAAATGTTGTGATATTAAAAACTTGTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 62843-63622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAR020000054.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXT, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 62843 36 83.3 39 ..TT...T..T..................G.....G GCTTTAGCGTAGTAGAACATCTCTCCCATATTTGTAACT 62918 36 94.4 39 ..........T..................G...... GAGTCGGTGTAGGAAAACATATACCCCATATCTGTAACT 62993 36 91.7 39 ...T......T..................G...... ACGATAGTGCTGGCGAACATGTAGCCCATATCTGTAACT 63068 36 86.1 39 ..A.......T...A..G...........G...... GCAGAAGCATCGAAAAACATCCAGCGCATATTCGTAACA 63143 36 83.3 39 ....CC.........C.G.T.........G...... GCTTCGGTATAGTCGAACATTCCAATCATATTTATAACA 63218 36 88.9 39 ..A..C....T..............T.......... GCAATAGCACCAGAGAACATATCCTCCATATTTACAACC 63293 36 88.9 36 .C..C..............T.....T.......... GGAGTTGAGGAGAACATTGAGCTTGTATCTGTAACT 63365 36 88.9 36 C...C..............T.....T.......... AGAGTGTCAATGAACATATGGCTCATATTTACAACC 63437 36 100.0 39 .................................... GAAGTGGCATAACAAAACATTTCTTTCATATTTACAACC 63512 36 100.0 39 .................................... ACATTGGCGCCATAGAACATTCGATTCATATTCGTAACA 63587 36 88.9 0 ....CC.................G...........G | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 90.4 38 TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Left flank : AATAACTCAGGTTAATTTTATCGCCTTCGCTAGCGTTAAAATCTTTAATGGTGTCATGACCCGCATTTTGATAACTATAAACAAAAGTATCCGCACCAGCGTTACCCGTAAGAGTGTCATCGCCTGCACCGCCGTAGAGTGTGTCGGCATGGTTGCTCCCTGTTAGCGTGTCATTGTCACCTAAACCGTGAAGGGTGACAGCCTCCCTATGTCCGCTCTTATCTATTGTATTCTTGGCGTTGTTGCCAACAAATACATCTTTAATACCATTGTTATTACTGTCATTAAGTAATCCATTATCAGCAATAGTCCAGTTTTTGTCCAGTAGTGCTTGGCGTGCCGTGGCATTGGTGTATTTAGTGTCATTTGCACCAAAACTTACGCCTGTTTTTATACCCTCATTGTCGGTTACATTAACATCTGACCAGCCTGCTAGTAATAGGTCGTAGTTTTCAGTGCTAAAGGCGGTTTTATCAAGTATATTATTAGCAACCTCCAGA # Right flank : GCCTTCGTTATAGCAAACGCCTCGAGTAATAGTTTCGTCATAGCAAAACATATAACTCATATTGGTTGCCAACGAAGTATCCATGTTACTAATGTCGTCGTTGAATGAAGTGTGTCCGAAGTAGAGAAAGGAAAGATTGGCACTTTGTTCAGTGACCAAAGTTGCCACTTCATCAGTCATTATTGCTTGAGCAGCACTATCTGTTGGATTGGTAAAGTCTGTTTTTGCTTCAATAGCAGCTTGATAACGGTCTTCTAGATAGTAATTAACACCTTTTACCACCATGGATAATTGCTCAACAGTGGTTTTGTCGTCATCAGGCGTGTTCCCGACATAGCCAGAATCCTCGTAAATTTTGTTAAGAACATCGGCACTACTTAATACAGTAATATTAAAAAAAACTGAGGCTGATATCAACTGAACTGCATCAATTTCATTGTATTCATTGGCACTATTGCCAATCGTTAAGCGAATTTTATTTGATAAGTAATCAAGTGCAT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 430-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAR020000073.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXT, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 429 28 100.0 32 ............................ TAGCCAATTTTTCAGTATGCCAGTGTTCCAGA 369 28 100.0 32 ............................ ACCCAAGGCATTTAAAGCATTTACATTTGAAT 309 28 100.0 32 ............................ TTTTGGCATTAAAAAATCTTATGCTTCAGAGT 249 28 100.0 32 ............................ ATTACCAATCTTGGCACTGCTGCACAAGCCAT 189 28 100.0 32 ............................ CACTTATTCTATTCCTGGTTTGTCCTCTCATT 129 28 100.0 32 ............................ AATTCAGGAATATTAAAAATCAGAAATTCAGG 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AAACTGGCTAGGTGGCTTATCTGGCTATTGTAAGACAAGTAATATCTCGAAAATACCTGATAAAGTCAAAGGCTACCAAGTAATTTCACGCATTCGTCAAACAATGAATGAAACCAAGTTAAGCCAGAGAATTTCACATCAAACACAAAATAATATTTTAAAAACTGATACAGATATTCAAGCATATGAAAACCAATATCGAGCAAAAATGATGGCAACAGGGTTGGGTAATCCATATTTAGAATTAAATAGCTCCAAAGGCGGATTGTATCGGATTTATTTGCATTTTGGCAAAATTCAAAATAGTCCTATCGCTGGTAAATTTAATAATTTTGGACTTAGCAAAACAGCAACTATTCCAATCTTTTAACCATTGATTTGGTTGCTCTTTAAAAATTTGTTAAAAATCAAGTAGTTGCAATAACGATAAAAAACATTGGTAAAATCATTTTTTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACT # Right flank : ATGATATGGGTGCTTCTACTGCTAAGGGTGCTCATTCACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //