Array 1 617-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNU01000034.1 Prevotella amnii DNF00058 contig034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 616 47 89.4 30 AG..C................C....C.................... GAATCGTACCAAATGATGAAATGATAATGC 539 47 93.6 30 .....................C...TC.................... TAAAACGCCCTAACCTCCCCTTTACGGTGT 462 47 97.9 29 ..........................C.................... ATCGGGTGCTATATAATCATTACCATAAT 386 47 97.9 30 ..........................C.................... TAACCTTCTCGTGGTAATGGCGGACTTGAA 309 47 100.0 30 ............................................... CCAAGTTTTCAATGGTGCTAACCTTAACAT 232 47 100.0 30 ............................................... TCTATCTGATGATGACCACAAAGCCTTATA 155 47 100.0 30 ............................................... TTCGAATATTTTCACCCCTTTTGCATCTTT 78 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 97.3 30 GTTGTGATTTGCTTAAAATTTTTTACTTTTGTAGGTGTATAAACAAC # Left flank : TTATTAAAGCTGTTTGTGAAGAGCTTGGGGTAAAAGATGTTATAACATCGCCCACTTTTGCGATAGTTAATGAATATACTGATGGGAAGGGATTACCTATATATCATTTCGATTTTTATAGAATAAAGAAGCTTGAAGAGGTTTATGATATGGGGTATTCTGATTATTTTGATAGTGGTAATCTTTGTTTCTTAGAGTGGCCAGAGCTTATAGAAGATCTTTTACCGGATAATGTTGTAAAAGTTGTTATAGAAGAAGAGGACGATGGTTCTAGGTTAATTAAACTTTAGAAAGCGTTTAGGAAGAGTCTATAAAAAAAATGCAACTAAGTTTTTAAAAATTAAACCTCAATTCGGGATAAGAAGATGTAAAAAAGTAAATAAGGAATAAGGTGGCGTCTTAAATATTTTGTATCTTTATAGCTAATTAAAGTTTCTTCTCTCTTATAGGGAATACAATGGAGGGTTTAATGATACAAGGAAGCACATCTTTAAAGTTTA # Right flank : CTCGGGTTCTACAAAAGGCTGTTTATCAGGCC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTAAAATTTTTTACTTTTGTAGGTGTATAAACAAC # Alternate repeat : GTTGTGATTTGCTTAAAATTTTTTACCTTTGTAGGTGTATAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 95-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNU01000168.1 Prevotella amnii DNF00058 contig168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 95 47 95.7 29 .........................T...........C......... TACACTCATTGGACGAACTGCTTTAACAT 171 47 97.9 29 ..................................A............ AAGTTCTTTTACCTCTTCCTCTAACTCTG 247 47 100.0 30 ............................................... TAGCACCTATACGATTAGATACTGCATTTT 324 47 100.0 30 ............................................... GAAATAATGACGAAGTAATTTATCATCTTT 401 47 100.0 30 ............................................... CTCAAAGTCGTCCACCTCGCCTATCTTATA 478 47 100.0 29 ............................................... ATTAACTTCTTGGGTTAGTACAGGTAATA 554 47 100.0 29 ............................................... CCTTTAATTGCGGTTTGCATGGCTTTCTG 630 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 99.2 30 GTTGTGATTTGCTTAAAATTTCTTACCTTTGTAGGTGTATAAACAAC # Left flank : TAAGTAATTGTTCGTACTTCAAGGTAAGATCGGCTATCAAACTGTTGAGCTGTATTATCTGTTTGTGCAGGGTAGCAATGTCTTCGTGTAGTGTG # Right flank : ACGGGCTCTACAAAAGGCTGTTTATCAGGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTAAAATTTCTTACCTTTGTAGGTGTATAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //