Array 1 148677-150297 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGA01000034.1 Lacticaseibacillus rhamnosus strain HCT70 IonXpress_017_rawlib.basecaller_c4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 148677 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 148743 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 148809 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 148875 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 148941 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 149007 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 149073 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 149139 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 149205 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 149271 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 149337 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 149403 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 149469 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 149535 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 149601 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 149667 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 149733 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 149799 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 149865 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 149931 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 149997 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 150063 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 150129 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 150195 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 150261 35 83.3 0 .......................AA.C...-..T.A | AA [150282] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : AGAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //