Array 1 127730-126603 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUD01000005.1 Escherichia coli strain 362-1 NODE_5_length_227679_cov_101.451112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127729 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127668 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127607 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127546 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127485 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127424 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127363 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127302 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127241 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127180 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127119 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127058 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126997 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126936 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126875 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126814 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126753 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126692 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126631 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154318-153435 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUD01000005.1 Escherichia coli strain 362-1 NODE_5_length_227679_cov_101.451112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154317 29 100.0 32 ............................. TTTTACCCGTCGCGGTGGCGGGAGTTGCGGAA 154256 29 100.0 32 ............................. GCTAGACAATTACAGAACGATGATTTCCGGCG 154195 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 154134 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 154073 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 154012 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 153951 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 153890 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 153829 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 153768 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 153707 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 153646 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 153585 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 153524 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 153463 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAACGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //