Array 1 2403-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRM01000012.1 Escherichia sp. MOD1-EC5350 MOD1-EC5350_12_length_179105_cov_89.3535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2402 28 100.0 32 ............................ TCAGCCATTGCGCGTAGCCTCCGCGATAAAAT 2342 28 100.0 32 ............................ AGGCCCACAGGTCGGAGAGGCTTTTCGTCATG 2282 28 100.0 32 ............................ GCTGTGACTGACGATGCGGCGCTTGTAATTGC 2222 28 100.0 32 ............................ AAATCCGAAATTTTCACCACCGCTCATCAAAT 2162 28 100.0 32 ............................ TTACAGCGTGTCAACAGGAATATAAATTGTTT 2102 28 100.0 32 ............................ GCCACCAACGTGACAAACTCAGCCAGATCCGG 2042 28 100.0 32 ............................ CGTCAGGGTCTCAAATGAGAGATATCAAAATG 1982 28 100.0 32 ............................ TGAATGGTCCACGGCGTGCCTTGACTGGTCCG 1922 28 100.0 32 ............................ GTGAGTGCTGCGGTGATATATTGATCGGCACT 1862 28 100.0 32 ............................ CGAGCGGCATTAAAAAACGTTACCGACGAAAA 1802 28 100.0 32 ............................ TGATGTGGGAGACGATCGCCATCCCCCGTTAT 1742 28 100.0 32 ............................ CTGATATACCGCCTGATAGTGTTAACATTTTA 1682 28 100.0 32 ............................ AGGGGAACATCTCGGAACTGTCGTAGCGATAG 1622 28 100.0 32 ............................ AGCAGTGGCAGATTGAATAAAAAGCCCCGAGG 1562 28 100.0 32 ............................ TTCCTGTCGCGAAAAAAGACACGTTGTATTCC 1502 28 100.0 32 ............................ ATCGTGCCGTCGTTACCCGGATCCTGCGAGGG 1442 28 100.0 32 ............................ TCCAGAACGCGTGCTTCATTTCGGCTCATCCA 1382 28 100.0 32 ............................ TCAAGCTCTTTCTCAGTCATCTGGCGTTCTAC 1322 28 96.4 32 ..C......................... GCAGCAATTATAAAAACATGCCTGAGCAACGC 1262 28 96.4 32 ..C......................... TGCTGTCGTTCAATCTCAAACCGGGTGACCAC 1202 28 100.0 32 ............................ AAGCGATTATGAGTCATGCGATAAATAGTTAC 1142 28 100.0 33 ............................ GCCCGAAGGCATCGTCTCTCAGGTCATGACGAT 1081 28 100.0 31 ............................ TGGCAGGGCGTGCCGCCCACCAGCACGTCTG 1022 28 89.3 0 .G......................C..T | C [998] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTTATTGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGTGCACGTCCAATGGCACGTGTGATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGCTTGTTAGGTAGGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGCGAAGGTCCAGACCCTTTTTTTGATGATGATGGTAAGTTATTGATAATTAATGCAGCTGGAAGGTAAGGATAAAAAAGGGTGGCACCAGGAAAATTAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAATGGTAGACGTTTGGTCGTGTTATGACGCTCTCAACTTCAAACCATTAGCCCCAGCAAACAATAACAATTGTGATAATTGCGATAAAAATCAATTTATCGCACAGAAATCAATGCTGTACTAACCTCGACGTCGTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAAATACCTTACCCCATCTGACCTCAAAGCCATTCTCCACTCTAAGCGAGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTTGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGCGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 489-1481 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRM01000002.1 Escherichia sp. MOD1-EC5350 MOD1-EC5350_2_length_383523_cov_91.7201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 489 28 100.0 32 ............................ TGGACTATCAGCGCCCGGTTGCCGGAGAGTGA 549 28 100.0 32 ............................ AATAAAACACCCTGACAATAACGCCCAAAATA 609 28 100.0 32 ............................ ATCACAAGAAACATGAAGCCGTCTTTGGTGAT 669 28 100.0 32 ............................ AGCTCCGGTGCGCCCATTTTCTCCAGCTCACT 729 28 100.0 32 ............................ TGGTGGCGTATGCAGGGCTATGCGCTGGAAAT 789 28 100.0 33 ............................ AAGAAACGCAGCAGCGTTGACGCCGCGATTAAT 850 28 100.0 33 ............................ ATAATTTGTTTTTGCACCACTGTACCTCGTTAA 911 28 100.0 33 ............................ AGCAGCGATGCGAAGCTCTTGAGGCGGATCAAT 972 28 100.0 32 ............................ ATTCCGTAGCAGTGCGCGTAGGCAGTGGTGCT 1032 28 100.0 33 ............................ GAGCCAGAAAGACCTACACAAGTTGCAGCTCGA 1093 28 100.0 32 ............................ GCGTGCCAGTCTTTCTTTTCAAGAGACATTCT 1153 28 100.0 32 ............................ CCCTACCCTCGCATAAACAAATAACCGTCTTA 1213 28 100.0 33 ............................ GCAACAAGGGGGGCGCATGACCGCAAACATTAT 1274 28 100.0 32 ............................ GAACGCAACAGCAGCACGACATTCAGCAGTGC 1334 28 100.0 32 ............................ GCAAACCAGATTTGGGATAAGGTTAACTCAGG 1394 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACTGCCT 1454 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGCTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCAATGAACACACGATTTGTTCGACCGAGATTATGACCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTATGTAGAAAATATGAAATTGAAGAAGTACCGATCGGCCCTTTTTTCAGGGTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTATGACTCGGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAG # Right flank : ACTCAACGCTCCATCCTCCAGGATTTACTCCCCATAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCTATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCCAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //