Array 1 145260-145582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072389.1 Prevotella scopos JCM 17725 strain W2052 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 145260 37 100.0 35 ..................................... GATTTTTTAATTTTCGTACTCATAAACTCTTTATT 145332 37 100.0 36 ..................................... CTCCAGTCTCTACCCGTTTGACGTTTTACCGCCTTG 145405 37 100.0 35 ..................................... CCGTATGTTTCTGTCCATTGCTTGGTTATCTTGTA 145477 37 100.0 32 ..................................... TAGGTGTTTTTTTCATATGAAAGTAAAAAAGG 145546 37 89.2 0 .....................T.........A..T.G | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 97.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCGGCGCTGATTCATGAAACGAAAGGTACGATAACATGTGTGGGATTTATGGGAGGCGATGGTGACCCAGCTGAAGTTGACCGATTAGCACAACACGTCTTATCTCATCACCCGCACCTGAAGATTGGTTGGTACACTGGGCGTACTGCAATCTCTCCGCTCATCGACCAACAGCACTTCGACTATATCAAAGTGGGACCTTATCTTCGTCATCTCGGTGGACTTGACTCTCCTCGCACCAATCAGCGGATGTATCGCCGCAGCCCCGATGGCAGCTTTGAGGACATCACCTCCCGCTTTTGGAAAGCCCATGACGACAAGAACTTATAAAAAAGTTGTCTTTGCTTGATAAGATTTATCCCTGCGTTCCTTGACTTTTTGATTAAAAATATCTACCTTTGCACTCGCTTAGGAAGCAGTTAATTTCTGTTAACAAAAACCTATCTGCTTGGGCTTATAAATGCCAATCCCGCTTATATAAAGGATTTGTATGTCTTGAT # Right flank : GAGGTGGCAAGTTTGAGAAATATAGTAATTCTTTAAGCATAGTACTTCTTCCTCTTTTAGCAGTACTCTCACTTTAGGAAAGGTCAGTCAGAAAGTAGTTTGTAAGAAAAGGTCTGCAACTCTTTGCCTTCAACTTTGGAATGATTATCTTTGTCATTGCGTTCACGGCTACTCCTTGTGATGGTGGGTGTGTTTTATAAGCCACTGTAAGTCATAGAGTAACTAAATAATGACCGATTCGGGTTTAAGACAATCATCATGGTGAAATTGTAATATATGCACAGCGTTCTCTAAGTGTAACGAATGATTTAAGGTTTCTCTGGCTCTTATATGTCTGCTTAATCAGCAAAGACAAGTTGAACTAAAATAAGTTTGCTGTCATTCCTGTCACCTTTAACAAATGATTATAAGGCTGATTCACAATGAGTTATCCCAGAATGTTAAAAGTGACAGCAAATGAAAACAAACTTATTGTAGTATATGTTTAACCCAAATCGGTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 245108-250062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072389.1 Prevotella scopos JCM 17725 strain W2052 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 245108 47 100.0 30 ............................................... TATAAGCAAGGAGAATTTAAGCCGATAATT 245185 47 100.0 29 ............................................... CAAACGTGAATTTATAAACCTTTTCGGAT 245261 47 100.0 29 ............................................... AAATCAGCTCGATCTCTTGTTGATAACTC 245337 47 100.0 30 ............................................... TAGCACTCGCCTTACCTTATACAATCGGTA 245414 47 100.0 30 ............................................... TACTTCTGCGAAATTGAAGCGTGAATACAT 245491 47 100.0 30 ............................................... CAAACGGTCTTGTTACTTCTGCTCAACTCC 245568 47 100.0 30 ............................................... TTTGCCCCCATACGCGTTTAGCGACCATAA 245645 47 100.0 29 ............................................... GGCATCTAATTATATGTCGGAAGATGTAT 245721 47 100.0 30 ............................................... TCAGATGATGATATACTTTCGCTTATTCCT 245798 47 100.0 30 ............................................... GTTCCCACGTATTCTAAGCTAAAGTATAAG 245875 47 100.0 30 ............................................... CCTTATGTTTGGGCTTCAAATGGTCTCGTA 245952 47 100.0 29 ............................................... GACGTTTGAATTTAACCCTGCTATGTTGA 246028 47 100.0 30 ............................................... GACGAACAGGGACGTATAAATCAAACAAGT 246105 47 100.0 29 ............................................... ATAGGGCGTCCGCACTTGCCTTATCTTAC 246181 47 100.0 30 ............................................... TTTGTAGCTAAATGCTCTGCTAGAGCAATG 246258 47 100.0 30 ............................................... CCTTAGTTTTACCATACCCTGTAGGTAATT 246335 47 100.0 30 ............................................... GATGCAGAGAATATGAATCTTACCAAGATT 246412 47 100.0 30 ............................................... TTACCTTATGCGGTGGGTGATTATGTACCT 246489 47 100.0 30 ............................................... CATGGGTGATGCTGGTTCTATGGATTTCGG 246566 47 100.0 30 ............................................... AGAATTATTTTCCTAAAACATTTGCGAAAA 246643 47 100.0 30 ............................................... CCCCTTTAACTCTTTTATCTGTATAGTTAC 246720 47 100.0 29 ............................................... ATGGCTGGGTCATACTCCTCTTCCCATTC 246796 47 100.0 29 ............................................... TTACCACCGTCAGTATCAATCACCTTCTT 246872 47 100.0 30 ............................................... TGTGTTCAACATTACAAGTTTCAAGACGCT 246949 47 100.0 29 ............................................... GGTGCAACAGATACAGTCCCTTGTGTATT 247025 47 100.0 30 ............................................... TATTCTATTACTACACCCTTGCCCAGACTA 247102 47 100.0 29 ............................................... AAATTATAATGTTATACTGTTGGCTTATA 247178 47 100.0 30 ............................................... GATAATATTGATAAGAATAATAAGAATAAG 247255 47 100.0 29 ............................................... ATGCTGTATCTCCTTTTATATAAGGCATA 247331 47 100.0 30 ............................................... GATAACACTGATAAGCGTAACAAAAATAAG 247408 47 100.0 30 ............................................... TTACTTCCTGTTGGTTGCTGGGAAGTTAAT 247485 47 100.0 30 ............................................... TTACAAAATGGAACGCCGTCAAGTGCTTTG 247562 47 100.0 30 ............................................... ATCGCTTACGAGGGTGTGAGATACCACAAT 247639 47 100.0 30 ............................................... ACATTCACGGGTATAGAGTTAAGAGACGAG 247716 47 100.0 30 ............................................... ATTGGGCTCATCGTTCTTTGATTTAATGAC 247793 47 100.0 30 ............................................... ATTATGTGTATTCATAGTATCGTTCCACAA 247870 47 100.0 30 ............................................... ATCGTACTACCACAACTAAGTAAGGAAGAC 247947 47 100.0 30 ............................................... TTAGCTTTAGATGTCGTATTTAGAGTATTT 248024 47 100.0 30 ............................................... TCCAGTTGATGTTGTTGAAAAGGCTTTAAC 248101 47 100.0 29 ............................................... TTAGTAGTTAAGTCATCCTGTATCTGTGT 248177 47 100.0 30 ............................................... TAGGGGGCAGCATAGCCCCCACAGCGTCCA 248254 47 100.0 29 ............................................... TGTTCCTCTTGCACGTCTGAAAGAGATAA 248330 47 100.0 30 ............................................... TTAAAGATAAGAAATAGATTTTTGGTCATT 248407 47 100.0 30 ............................................... GAATTTTGACATATTAAGTGTTGAAGCCGT 248484 47 100.0 30 ............................................... ATTGGGCTCATGCGTTCTTTGGCTTTTTGC 248561 47 100.0 29 ............................................... ATTGCAACGACACATTAGTCGGCTTATAC 248637 47 100.0 29 ............................................... GCAGAAACTATATCTATGCTACTGGTCGT 248713 47 100.0 29 ............................................... ACTGACTATTGAAATACCTTTGTATTATG 248789 47 100.0 30 ............................................... GTCATGGTCTTAATTAACTTTTGAGTTATG 248866 47 100.0 31 ............................................... TTATCAGTTTAATATGGGTTACACTCCAACT 248944 47 100.0 30 ............................................... CAAACTTATGATTTACATCTTCGTAAAGGT 249021 47 100.0 30 ............................................... TGTCAGGATGACGAAGAATCGTTGCGCTTC 249098 47 100.0 30 ............................................... ATAATGGACCTACTTTTTCATCAGTTATAC 249175 47 100.0 30 ............................................... TTATGGGAGTTACGGGCGTTTCCTTTTTGA 249252 47 100.0 29 ............................................... CATGTTAACACATCCTATCGTAACTATAT 249328 47 100.0 29 ............................................... TTAGCTTTAGATGTGTTCTTTAGAGTATT 249404 47 100.0 30 ............................................... ATAGCCGTCCTTATAGTTTACCTGAACAGC 249481 47 100.0 29 ............................................... ATTAGCATTATATTTCAATTACGAGGCAT 249557 47 100.0 30 ............................................... TCTTAAGATAGATTATTTATAAACATAAAA 249634 47 100.0 30 ............................................... TCAAGTGGTAAGGACATTTGAGGTGAGCAG 249711 47 100.0 30 ............................................... CTCACTGCGTTAATGGACGTTTCGCACTAT 249788 47 100.0 29 ............................................... GCAGCCGACTTGCAGCCTGTCAATGGTAA 249864 47 100.0 29 ............................................... ATAAATAAAATAACGAATGAAACAATCAT 249940 47 100.0 29 ............................................... CAAACTATTTTGCATCAGCACTTCTGATG 250016 47 93.6 0 ..................................G.T..A....... | ========== ====== ====== ====== =============================================== =============================== ================== 65 47 99.9 30 GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Left flank : GCTGCAAGTCTTGTTAAATGTTATAATGGAGAAGCTCGTGAGATATCTTATCCTTCTTTTCTTTGATGCAACGACTAAGTGAATATCGGGTTATGTGGGTGATGGTCTTTTTTGATCTTCCAACTAATACAAATAAGGAGAAACGTGCGTACATGATTTTCCGAAAAGACCTGATGAAAGATGGATTTACGATGTTTCAATTTTCAATCTATGTCCGGCATTGTGCAAGTAAAGAGAATGCAGACGTACATGTGAAGCGTGTAAAATCTTTTATGCCAAACTCTGGAAATATTTGCATAATGGTTATTACCGATAAGCAGTTTGGGGAAATAGAACTTTTTAGCGGAACACAACCCAAAGAGCCAAATGCTCCAGGTCAACAGCTTGAGTTATTTTAAAAAAGAGCCCTGTCAATGATGACAGGGCTCTTTTAAATAGCAGTTTTTATTTTGCACATATGTCTTGTTAGCTTCTGATTATCAGAATAATATCTGATTTCG # Right flank : CTTGCTTTTATTAAATCATCGATTTTTATGTTCTTTCTATGTTATTCTATACCTCTTATGAAATCTTTTGCATTTAGAAATTTGTTGCTCCAAGAAATAATTGAATATTTACAATCGAATGCTCTGATTCTATGTAGGATTGTATTTCCATCCGTGATGAGGTTTTTTTATTAGAGCTTTTTGAATGCTCTTACTATCAAATAGTAGCTATTGTTTTTCTATCTTGATACTCTTTTATAATATTGAACTATAGTCTTATGTCTTTTTTCGTTTTACCAATCACGGCATAAAATAAACTTGCTGTCACTCCTGTCATTTATGCTCTATACTTAACTTGTTAGTTTAGAGCAAGATAAATGAACTTTTAAAAGTGACAGCAAATTAAAATAAAACAATCTCTCGTGTATGTAATTCTTTCTCTTACATGAGAAGTCTTATCACACTATAGCTAATCGAGATATTTCAATGACTCGTTCTTCGTTTAATTTGTTCGTGTTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 337105-335192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072389.1 Prevotella scopos JCM 17725 strain W2052 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 337104 37 100.0 31 ..................................... ACAACACTCTTTTCATAATTTGTAGCACAGA 337036 37 100.0 36 ..................................... ATGTTATCTTGCCCTTCTCAATTTCCTCTTTGATGC 336963 37 100.0 35 ..................................... CTCTGCAAGAGTAGAATAGTAATCTTTAGGAGCTT 336891 37 100.0 38 ..................................... TTGCCCGTGCATGATTTTATGCACTTTACCATCATCGA 336816 37 100.0 38 ..................................... TGATTCAGGACGTGAAAGAATGTGATTAACTGCAAAAG 336741 37 100.0 33 ..................................... GTTTTCTTTGTACCACAAAGTGTCGAAATTGAA 336671 37 100.0 35 ..................................... AGTGCAGAACGACTACACACAAAAAGTACAATACA 336599 37 100.0 34 ..................................... CTTACTAACTTTTGGAGTACCCGCCAAAGTAGCT 336528 37 100.0 36 ..................................... ATCTTAGATCTTTCTGCTCTTTTTAAAGAATGACCT 336455 37 100.0 35 ..................................... GCCTCCCTGTGCTGCTAAATCGATAAAATCAAATT 336383 37 100.0 33 ..................................... GTTATATATTGGATTTATCGGGTTTCTGGAGCT 336313 37 100.0 33 ..................................... TGGTTTATAACCATTTAAAGCCTCGATATTCCA 336243 37 100.0 34 ..................................... TTGCAGATGTAACCTGTAACTGAAAAATTGTTCA 336172 37 100.0 34 ..................................... CGAGCGATGGCTGCCTTGTCGAAGTTCTTAACGT 336101 37 100.0 35 ..................................... ATCATATTCTGCTTTTGTATTGAATGTTTTTAAGT 336029 37 100.0 34 ..................................... AATCTATCAATTACTAATAGCTTGTTTAGGTCAA 335958 37 100.0 34 ..................................... CATATTAGGAAAGGCTTAAATAGTTACTACCGAT 335887 37 100.0 34 ..................................... CAATCTTAAAACTGTTACCCGCAGTCAACAAAGA 335816 37 100.0 36 ..................................... CAACCTTATTATCAGAACTACTAAAAGGATTAGTAT 335743 37 100.0 34 ..................................... GCAGCATCATCATTGTCTCGAAACTGAGCAACAA 335672 37 100.0 35 ..................................... CGACTAAGAGGATTAATAACAATAACTAAAAACTT 335600 37 100.0 35 ..................................... GTAACAGCCTCAACCCATTCACGTTTTTCACCATT 335528 37 100.0 39 ..................................... GTGCAGAACGACCACGCACATGAAATACAGTACAAATGA 335452 37 100.0 37 ..................................... ATTGCAATACGTTTGTGTATCCTGCGTTCTTTACTCG 335378 37 100.0 38 ..................................... TGAGAGTACTCTCACCAACGCACTACTCTTAATGGTCT 335303 37 100.0 38 ..................................... AAAAACCTAAATCAATTCAAAGCAAATTCAACACCTAA 335228 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 99.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : ATGCTATTCTTCGTTATGTATGATATAGAAAGCGACAAGGTGCGCTATCATATTGCAAAATATCTGGAACGTAAAGGATGTACTCGCATACAGCGTTCTATCTTCCTTGCCGACCTCGATAAGAAAGTCTATGACTTAATCAAAAGCGACCTTGAAGAAGTACAATCGCTCTATGACAATCATGACAGCATCATCATATGTCCCGCCTCCACTGATCAATTACAAGCAATGAAAATTATCGGTGAAGATATAAGTATAGACATCATAACTCGTTCGCGTAACACATTATTCTTCTAAGAGATAAAACTAACAAAACTCTTTTAGCAAAAAAGAATGTACTATTTCTTAAAGAATATTTAACGCAGTGATCTTTGACATCTTGAAAATTATTTGTAATTTTGCACCCGCAAATAAGCGGGTTAATTTATGTTAATAAAAGCGTTTCTAAAAGCTTGAACATACCCCAAATACTCGTATACAAAGGAACATAAGTCTTTGCT # Right flank : TAATCTAATAGTACTATAACAAAGATTCCCCCGATATTAAGAAATAACAGAGTTCACATATATCATAAGTTCTCCTGACTTAACTAAGATTATAGCAAGCTATTTTCTCAAGTTAAATTTCCTGTCACTCCTTTCAGCCTACACACGCATACAAACACTTGATTAACAGGAGATTTGTTAGATATGTTAAAAGTGACAGTAAATTAAAAACAACATTACTATCATAAAAATCACCATAAATCTTCTTCTAACTCAGTAGACTTTATCACTCCATATTTGGGAAATAGCAAAATTATAAACACGCAAAGCATTTATAATGGCATTATTTTTCGTAAATACTTCTTTCATAAACAGAACCAACTACCCCCTCCATTCCTACAAGTAAATAACAAAATAAGTAATATAAATGTTTTTGACTTATAGAAGTTTTTTCGTAACTTTGCTCTCAGAAACAAATTAAAATAAAGATTAGAACGTTATGCTTACATTAAAGCTCATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 352639-351306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072389.1 Prevotella scopos JCM 17725 strain W2052 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 352638 37 100.0 35 ..................................... AACACGAACATAGTTCTCTTGAGGAACAACGTTCA 352566 37 100.0 35 ..................................... TGCGTCTTTGCAGATGTAACCTGTAACTGAAAAAT 352494 37 100.0 34 ..................................... TCTTAAAATATATTGTTTGAAGTACTTCATAAGT 352423 37 100.0 34 ..................................... TCTTCCAACACCAAACTAAACTACAATTATAATA 352352 37 100.0 36 ..................................... AGCTTTATTTTTTCTGTCATAAAGCTGTCTATTGCC 352279 37 100.0 33 ..................................... AAAACATTTTCATATCTTTGTTTCTTTTTATGT 352209 37 100.0 36 ..................................... TCGTACTGAACTTCAGTATGCTCCTCGAATAAGTCA 352136 37 100.0 34 ..................................... CCAATGCATCAGCGCCATTTGAGAAATTCAATAG 352065 37 100.0 35 ..................................... AAATATTTATCGTATTTTGGAATTTCCGAGAAAAC 351993 37 100.0 36 ..................................... AATTAATGAAATCATACATCACAATGCTAAATGTTA 351920 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 351847 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 351776 37 100.0 37 ..................................... CAAGGTATATATCACATACCAAGTTAACTGTGTCGTT 351702 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 351629 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 351558 37 100.0 35 ..................................... GCTAAAACCCTTCTTGCGTCCTCAACCTTTAGGAC 351486 37 100.0 36 ..................................... GGAAGTATGTTTTTGTTGCAGAATTTCAAAGATATA 351413 37 100.0 34 ..................................... CATTGAGAGAGTCCGCAATACCTAAGATAGTGAA 351342 37 91.9 0 ......A..............A............T.. | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.6 35 CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Left flank : TCAGTCGAAGCCTTAAACCCATCCTATCACATTGATAGATATAATCTTACCCTGTTTTAATCAGCCGTAAATCATGATATTTAGAATTAAAAAGTAAGCAAATGTTTCTTTTAGTCCTGATTTCCATAGCCTGAAACCTTGACACTATTTCATCTCCTCTGAGTAGTAGTTTTTTTGTTTTGCCTGTCAGCTTATGATTGCGATACACCAAGACGTCACTAAATAAACGACTACTTCCTACGAATATTACGAACATTAGTTTATTCGGGGCAATCAACTCACACAAAACGTTATAGAGTCAGTTTAAGGGAAAAATGTAAGTCTGATTGAAAAAGCAGCCACAAAATAAAGCATATTTAACAAATTATCATACACAAGTATGATTCTTTATTTGTACCTTTGCAGCCGAAAAGAAAGCAGTTAATTTATGTTAACAGGAGGCTTTTTTAAGATCAAAGACACTTCAAATAGTGATAAATAAAGGAATCTAAGTCTTAGCT # Right flank : TCGCAACAATTATCCTTAACTCATACTTTTGAACATTGACTTGTTTTTCAATCTCATCAATGGATACATGTCTTAAATAAACTTCCTATACGTGAGATATTAGAAGTCTGTTGCTGCCGTCATTCTGATTTCACCATACGATAAACACGCAAACACTTGACTATATAATTTTCGTTATTAAGCCTACTGGTTTCTTGTACCCATTCAACAATGTGCATGTTCAGTGTACATGGAAAATGGTAAACATCATGAATACTTTTTCTATTTCATTAATAAAAATATAAAAAATGATGCACAATTTATTAATTTTTTATATCTTTGCATGCATAGTCCTAATCACCATAAATCATTTCACCGGAAGAAATTCCTTGATAAGAAAGATAGAGATTTAGCGACAAAGTCACTATAAACATTACCTAAGATATGAAAACAAAGAATGACTAAGATAAAAACACTAACCATACAGTTTGACACACCTTTACGGCGTTCAGAGATTCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 1299393-1302222 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072389.1 Prevotella scopos JCM 17725 strain W2052 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1299393 37 94.6 33 ..T...............................A.. ACAGCCTCATCTACAGACGACATCTCTGGATGA 1299463 37 94.6 35 ..T...............................A.. AGCTCAATTCCCACGTAAGAGTTGGTTGAGCCTGG 1299535 37 97.3 38 ..................................A.. TTATAGATACTTGCTTTTTTTGTACCCAAACTTGTTTG 1299610 37 97.3 35 .....................G............... TTAACTAACTTGTAGAACGTATCAGCTTTGATTCG 1299682 37 100.0 32 ..................................... TCTTTGTTACAAACTTTATCGCCAATCTTAAT 1299751 37 97.3 32 .....................C............... TCATTGTCTTTATCGTAGTTCATTTCAGATGA 1299820 37 100.0 35 ..................................... TTACACAAATTAAGTGCAGTTTCTAATATCTCTTT 1299892 37 97.3 33 .....................G............... ACCAAGTTTTCTCATTTTATTCCACAAGATAGA 1299962 37 97.3 35 .....................G............... TTGCTACCCTCTATACAGTAGCTTGTACTTGCCCA 1300034 37 100.0 39 ..................................... TTTGCTGTCTGTTTCTCGAAGCCTACGAATGTCTCTTGA 1300110 37 100.0 34 ..................................... TTATTAATACCTAAGTTAAATTTCATAATTTTAT 1300181 37 97.3 33 ...........C......................... TAAGCCTTTTTTCTGTTTAAGCATTATCATCAC 1300251 37 100.0 35 ..................................... CATCTTTGTTCTTCTTTGACACTGTTTTGAGTGTG 1300323 37 100.0 34 ..................................... ATTCCTATAATTGCAGGCGCAAACAATACGAACG 1300394 37 100.0 35 ..................................... AACAGGTTTGTCCAATGTTAGACACAAGCGAATGT 1300466 37 100.0 32 ..................................... TTCTAATCTCCAGCGAGGAAACTTTCTGCGAT 1300535 37 100.0 34 ..................................... ATCATCTTATGCACGCGTCCATCTTCGAGTATCA 1300606 37 100.0 34 ..................................... GAATTGCTAATATATAATATTTATGCTTTACGAT 1300677 37 100.0 36 ..................................... AAATACCTCTTCAAGTACTGAGTCAACTTTCATTAC 1300750 37 100.0 35 ..................................... AAGATAATAAGTGTTCCAAGACTCAAAACGCTTGT 1300822 37 97.3 35 .....................C............... AAGATTTTAGATAATCTTCATAAAGGCGGTGCTTT 1300894 37 97.3 35 .....................C............... CGGCGAATAATTCGTCCATGCTATCATAGTTCTGG 1300966 37 97.3 37 .....................C............... TAGAACTCAAGAACAACATTCTTGGTTCCCTTTCTGT 1301040 37 97.3 37 .....................C............... TAGAACTCAAGAACAACATTCTTGGTTCCCTTTCTGT 1301114 37 97.3 36 .....................C............... GCTTTAGAAGAAGCCAATTCTATATGCTGAGATATG 1301187 37 100.0 34 ..................................... AGTGTAGCGATTTTAATTTCCTTTTTCATTGTTG 1301258 37 97.3 34 ..................C.................. CTTACGTCAATGTAGATCTGACACGCAATAAATG 1301329 37 100.0 33 ..................................... TACTTTGTATGTTCATTCGATGGGATGATATCA 1301399 37 100.0 33 ..................................... ACTTGCATTCTCATCATCACGAAGTTGTGCAAC 1301469 37 100.0 33 ..................................... ACTCCATATACCGTAATATACTGTTCCATCGAT 1301539 37 100.0 38 ..................................... TTTCTGTTATAAGTTTTACACTTTTCTAGCTGTGTATT 1301614 37 100.0 34 ..................................... ATAGTATTAAAAAAGTTTATCTTCGTCGAAGTGT 1301685 37 100.0 35 ..................................... CCCATATAACACTATCTTTATAACGATTATAATCT 1301757 37 100.0 35 ..................................... CTTGAACCTATGACCTTCTGATTATGAGTCTGCTA 1301829 37 97.3 34 .....................G............... ACTTGTTTAAGCGTTGTTGTTCAAAAATCTGCCA 1301900 37 97.3 34 .............A....................... TGCTTACCACCATTAGCTACTACTGCATCCAACT 1301971 37 97.3 36 .......G............................. TCACCAACTAACTGCTGACGAAGGTTAACCACCGAC 1302044 37 97.3 34 ......A.............................. TAATCAGCCAGTTCTGGTATTAGGCGAATCATAA 1302115 37 94.6 34 .....................C............A.. TTTAGTTAATCTTTATAATTCTCCTCGAAATGAG 1302186 37 89.2 0 .............................G.A..T.G | ========== ====== ====== ====== ===================================== ======================================= ================== 40 37 98.2 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCTGCACTGATTCATGGTGCGAAAGATACCATTACCTATGTGGGTTTTATGGGTGGCGATGGTGACCCAGCGGCTGTTGACCTGCTTGCAAAATATGTCCAAGAACGTCACAACGGTTTGAAGGTTGGTTGGTACACAGGGCGCACAGCAATCTCTCCGCTCATCAATCAACAGCATTTCGACTATATCAAAGTGGGAGCCTACCTCCGCCATCTTGGTGGACTCGATTTCCCACGCACCAATCAACGAATGTACCGCCGCTGCACAGATGGAAGCTTTGAGGATATCACTTCTCGCTTTTGGACACATCAGATAGGCAATAACCTATAAAAAAGTCACCTTTGGTTGATAATATTTAACCCAGCGTTCCTTGACATTTTGCTTAAAAATTACTACCTTTGCACTCGCTTAGAAGGTAGTTAAATTCTGTTAACATGAGCATGCGTTATTGGTCTTATAAATACCAATCCCGCTTATACAAAGGATTCGTATGTCTTGCG # Right flank : GAGCTGGCAAAGTTGAGGTGGATTATTGCTTAGTATTTTTAAGCATGGTACTTCTACTTTTTTTAGTAGTATTCTCACTTTAGGAAACATTAGACAGAGAGTAGCTTATAAGAAAAAGTCTGCTCCGCTTGACATTCTGTTTTAGAATCATTACCTTTGCAATCGCTTTACGGCTACTCCTAAATAATGGGAAATGTAATTTTAGAGTCCTTGTAAGTCAAAGAATTACAGAATAATAATGAAAAAGTTTAAGACAATAATCATGTTACTATTGGTTGCTATTGCATTGTATGCGCAGCGAACTCCAAGAGTGACGAATGATTTTAAGGAAGGAGACTTAATCTTTCAAGTATCGCAAAGTCGTCAGTCGCCTTTTATTCAATTAGCAACTAATTCTCCGTGGTCACATTGTGGTGTGATTGTAGAAAAGGAAGGAAAACTCTATGTGCTTGAAGCCTCTAATGTTGTCAAGCTCACTCCACTTAAGAAGTGGATTGATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //