Array 1 501820-503739 **** Predicted by CRISPRDetect 2.4 *** >NZ_WACM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0409 contig6_AR-0409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 501820 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 501881 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 501942 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 502003 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 502064 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 502125 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 502186 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 502247 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 502308 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 502369 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 502430 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 502491 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 502552 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 502613 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 502674 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 502735 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 502796 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 502857 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 502918 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 502979 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 503040 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 503101 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 503162 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 503224 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 503285 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 503346 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 503407 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 503468 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 503529 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 503590 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 503651 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 503712 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 519871-521345 **** Predicted by CRISPRDetect 2.4 *** >NZ_WACM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0409 contig6_AR-0409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 519871 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 519932 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 519994 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 520055 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 520116 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 520177 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 520238 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 520299 28 96.6 32 .....-....................... ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 520359 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 520420 28 96.6 32 .....-....................... GTCGTTCATCAGGCACTACCGGCACTTTCTGG 520480 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 520541 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 520602 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 520664 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 520725 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [520767] 520767 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 520828 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 520889 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 520950 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 521011 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 521072 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 521133 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 521194 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 521255 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 521316 29 96.6 0 A............................ | A [521342] ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //