Array 1 1691538-1688777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022384.1 Capnocytophaga leadbetteri strain H6253 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1691537 46 100.0 29 .............................................. ATATGGGGGGGGTCTCGTCCAGGTGAACC 1691462 46 97.8 30 ...........G.................................. CGAGGCTTTCGTGTGGTACGTTATCAAAAC 1691386 46 95.7 30 ...............T................C............. CTTCCTCGATAGGAAGCTGCCTAGCAAATA 1691310 46 97.8 30 ...............................A.............. ATTCTAATATTTCATTCATTTGTCTCCCCT 1691234 46 100.0 30 .............................................. TAAAATTGATATATTTTTACATCATAAATA 1691158 46 97.8 30 ...................A.......................... AGTTTCGCCCATATTTGGCTTGCTTTCGGC 1691082 46 95.7 30 ...A...............A.......................... GCTGCTGCCGATTATCGCAAGCAGTTACAA 1691006 46 95.7 30 .............................C..C............. TTTGCGCTTCAGATTTAATGTGAGTGTATG 1690930 46 97.8 30 ...........T.................................. AGCGAGGTTTTAGAGCTGCATAAAAGTAGA 1690854 46 95.7 30 ..............................AA.............. CCTGAAAGCAAGTTTATTGAGGTTGAGCCA 1690778 38 82.6 30 ...................--------................... GCATTTTGCATAAAGGCGAGAAACCCGACA 1690710 46 97.8 30 ..........A................................... CCGCTACACCAGAGGGCAGAGACCACACCG 1690634 46 100.0 29 .............................................. TAAAGAAAGAAGAAGATGCTCTCGATATA 1690559 46 97.8 30 .......G...................................... TTCAGTTCATCAATGCCCTGGCACAAAACT 1690483 46 87.0 27 .................G.........C.........A.C....GT TCGACAAGCTCAAGCCCGAAGAGGTTA 1690410 46 97.8 30 .....................C........................ CCCACAGCTACAACCCCGATGTACGCAGCG 1690334 46 97.8 29 ..........................A................... TTTGCATTTTCCTCATATTAACGTGAGGT 1690259 46 100.0 29 .............................................. GCGTAGATTTGGATATACTTGTAGAGGCT 1690184 46 100.0 30 .............................................. TTTACTCTCTATTCCCAACAACTAAGTATC 1690108 46 91.3 30 ..........A...............AC.........A........ GTATGTCGTGATGAGATAGCAGGAGCAGGG 1690032 46 97.8 30 ..........................................T... GTAGCGAGAAAAATAAGGCTTGGCGCAACC 1689956 46 93.5 31 ..................T...........AA.............. AACGCTTAGCTTCCCTTATTTACGACTTTGT 1689879 45 71.7 23 .........................-.A..GA.A.CAACA.G.T.T TGAAGAGGCGGTAGCTGTTCTGC Deletion [1689812] 1689811 46 100.0 30 .............................................. GTAAGGCTCGCCACAATATCCCACCAATCA 1689735 46 95.7 30 ...............................A............T. AGTATGATTGCCTATAAATTGCCGTTTGGG C [1689724] 1689658 46 97.8 30 ..........A................................... TTTTCTCTCTTGTAATGGTAAGTCCTGATG 1689582 46 100.0 30 .............................................. TATCGAGGCAGAAGTACACGTTTTTAGTAA 1689506 46 95.7 30 .................T.....A...................... AAATATTTCTTTTTTAGAAAAAAAGAAACA 1689430 46 97.8 30 ..........A................................... GTCGGGAGTTGTACACTGAAAAGACAAAGC 1689354 46 100.0 30 .............................................. AACACATTAATAGTATGAAAGCATTAGAAT 1689278 46 93.5 30 .........................G......A............T GCAATACTAGCGAAGTACCACTTATCATCG 1689202 46 97.8 30 .....A........................................ CACACCCATCGTTGCCCCGAGCACGAGCCT 1689126 46 97.8 30 .........C.................................... AAGGACTATCATAGTATGATTGCCCCTTCT 1689050 46 100.0 30 .............................................. TATTCACCCGCATTGCAGCACTTGTAGGCG 1688974 46 95.7 30 ................................AA............ ACTATATGGATGTAGAGTGGGAACCCTCGT 1688898 46 97.8 30 ................................C............. TTACCGCCAAGAATATCGAGGACTTACTGC 1688822 46 95.7 0 .........................GA................... | ========== ====== ====== ====== ============================================== =============================== ================== 37 46 96.1 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : AGTAATTAGAATAAACGCATCTTCACTGTACATTCTGTATACTACAGATGGAAAGACCTGGATTGCTAACGCAAAAAGGTAATTAAGAGAAAAAGTATACTAAAAAGCCCCGAAATATATAATATTTCGGGGCTTTTTATTTCTCCTATTTCCTTATTACTTCTTTTTAAATATCAAATTTATTAAAAATAAAATAACAATAGCTCCAATAGCTCCTGTTAAGATAGAACCAATCAATCCTTCTCCAAGAGAGATGTGTAATACACTTCCTAGAAGCCAATATCCGACGCTACTTCCAAGAATACCAATAATGATATTCCCAATAAGACCTAATCCACTACCTTTGTAGATAGTTCCTCCTAACCATCCTGCGATGGCACCAATAATAAGTGTTGTAATAATTCCCATAAATTAAAAATTTAAATTAAAGTACAAAGATAAGAATTATTATATAATAAAACAAATAAAAAGAGGGAGAAGATACTCTTTTATGCAAAAAA # Right flank : CTCAATCTTTTAAAGGTTTTAGTATCAATGAGTTTTACTGAAAAACAGTACTGAAAAACCTCCTCTTTTGCCTTTGCTCATAAGGCAGAAGAGGAGGTTTTCTCTTTCCTATTCTTAAAAAGAGCTCTATGCTTTGGTAATGTTTCCTAGGCGGTCTACTTTCAGTTTGATACAGACTTCTTTTATTCTACTATCTCCACTAATAGTAACCTCTAACTTATTCAAACTTCCTAATTCTCCTATCTTAGATTTAGCATCATAGGATTTTATGAGAGAAGCTATAGTAGATTTTACAAAATGACATTCCTTTCCTGTAAAACTCACTGTTTTATAAATTCTTTCTTTCTGTTCTTTGCTGAGATTACTGAAATCTATTGCCTCTGGGGCTTCTCCTTCCATAGGTACATATACTAAATCGTTAGGCGAAAGGCTAAACAACAATGGTTCTCCTTTTTCATTACGCTCGGGGACAGAAGGGAGTCCTTGTTTTTGTCGTTCAA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //