Array 1 44187-44571 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VLJO01000006.1 Luteimonas sp. J16 LutJ16_scaffold_13, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                           	Insertion/Deletion
==========	======	======	======	=============================	==========================================================	==================
     44187	    29	  72.4	    26	T...C.T..............A.GA.C.T	GCCTCCAACATCCCCCGCGCCCTGCG                                	A [44190] Deletion [44242]
     44243	    28	  72.4	    36	....C.......-.G......CAG...GC	ATGGGCTGACGCCCCGCACCAGCACCGCGCTTCCTG                      	T [44250]
     44308	    29	  93.1	    58	.....................C....C..	GGAGGGGGGCCGCCCGCAGGCGCCAGTCGGTCACRCGTTCCGGGTTGCCCCCACCCCA	
     44395	    29	  82.8	    33	A.....................AG...GC	ACCGGGCATCCCGCATCGGCATCGCGCTTCTTC                         	
     44457	    29	 100.0	    58	.............................	GGAGGGGGGCCGCCCGCAGGCGCCAGTCGGTCACGCGTTCCGGCTTGCCCCCACCCCA	
     44544	    28	  75.9	     0	G....-.......C........AG...GT	|                                                         	
==========	======	======	======	=============================	==========================================================	==================
         6	    29	  82.8	    42	CCCCTCCCCCCGCTCGCGGGGGGAGGATG	                                                          	       

# Left flank :   GCCGGTGCGCATCTCGGCGATCTTGCCCATGTGCAGGACCATGCCGCCGATCAGCTGCACGTCGTAGTGGCGCATGCCCAGGACGCGGACGCTGGCCTCGCGGCAGACGGCGAAGGCCTCGGGCAGGAGCTTGTCGAGCGACTCGCCCTTGGCCACCCGCTCGCGGAACTCGGTGGTCTTGGCCTGCAGCTCGGCGTCCGAGAGGGCCTGCATCTGCGGCTCGAGGGCGTTGATCTTCTTGACGATCCCGCCCAGCTGCTTGAGGAGGCGGTCGTTGCGGCTGCCGAAGACGCTGGTGAGCAGGCGATTGAGCATTTGGGTACCAGAACTGTGACGGGGGCCTGGCCGGGGGCCGGGAACGGGCGCGCCGGCAATGAAAAAGGGCGCAAGGGCGCCCTTTTCGATGGCAACGCGCATTGTACCGTGGTGGCGGCCGGGGGCGTTTGCAAGACCGTGACGGGGCGCCGGCGGACGGGGGGCGGGCCCGTGCTTCATCTCCA
# Right flank :  TTGCAGGGGACTCTCGAAACTCGCGGGACTCGCGGGACTCGCGGGTGTGCGCGGGGCGGACGGCGCCGCGGATCGCCTGGGCTACTTCCGGGCCAGTTCCAGGAACTTGCGCGGATTGTGCAGGCGCCCGTTCTCCCAGACTTCCAGGTGCACGTGGGCGCCGGTGGAGCGGCCGGTCGAGCCGGCCCTGGCGACCTGCTGCCCCACCCGGACCAGGTCGCCGACCTTCACGGTGTTGCGGGAGTTGTGCGCGTAACGGGTCACGAAGCCGTTGCCGTGGTCCACCTCGACCACGTTGCCGTAGCCGCTGCGCACGCCCGAAAAGCTGACCACGCCGTCGGCCACCGCCAGCACCGGGTCGCCGGTGCGGGCGTGGAAATCGATGCCCTTGTGGAACTGGCGACCGCCGCCGAACGGGTCGGCGCGCCCGCCGAAACCGGAGGTGACGTAGCCCGATTCCACCGGCGAACGCGACGGAACGGCGTTGCGCTCGAGTTCCT

# Questionable array : NO	 Score: 2.56
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.14, 5:-1.5, 6:0.25, 7:-0.54, 8:0.8, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCCTCCCCCCGCTCGCGGGGGGAGGATG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [0,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCCTCCCCGCGCTCGCGGGGCTGTTCCC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.78   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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