Array 1 19093-20248 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAW01000059.1 Dickeya dianthicola strain NY1536B NODE_59_length_26986_cov_11.2434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19093 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 19159 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 19224 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 19291 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 19360 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 19427 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 19493 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 19559 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 19625 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 19690 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 19757 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 19823 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 19889 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 19955 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 20021 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 20087 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 20152 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 20218 31 81.2 0 .....................-AC....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : TGATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 562-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAW01000130.1 Dickeya dianthicola strain NY1536B NODE_130_length_10739_cov_11.1388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 561 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 501 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 441 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 381 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 321 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 261 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 201 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 141 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 81 28 92.9 0 ........T..T................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : ACATTTGATGAACGGGCGGATCACTGGACACCTGTTCACTGCCGCATAGGCAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9277-10685 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAW01000130.1 Dickeya dianthicola strain NY1536B NODE_130_length_10739_cov_11.1388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9277 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 9337 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 9397 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 9457 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 9517 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 9577 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 9637 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 9697 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 9757 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 9818 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 9878 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 9938 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 9998 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 10058 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 10118 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 10178 28 100.0 32 ............................ CGCACACCTCCCGCACACCTCCCGCACACCTC 10238 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 10298 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 10358 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 10418 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 10478 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 10538 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 10598 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 10658 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ACGACAAAAACCCGGCAGGAAATGCGATCTCGCGTTCACTGCCGAGTAGGCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //