Array 1 1079603-1073961 **** Predicted by CRISPRDetect 2.4 *** >NC_008340.1 Alkalilimnicola ehrlichii MLHE-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1079602 28 100.0 33 ............................ CCGGAGTTGTCGACGCAGCAGCTCTACCTCGAC 1079541 28 100.0 33 ............................ CGCGGTTGCCATATCCGATGAGGTGATTCGGTA 1079480 28 100.0 33 ............................ GTAGATCTCGATCTGCCTATGGCCAGTAGCGCC 1079419 28 100.0 33 ............................ CATCACCGGCCCGGTGCGGCGCGTGCAGAACCG 1079358 28 100.0 33 ............................ CGTCTGGGAATGGCAGAGCGGCCTCAAGCTGGT 1079297 28 100.0 33 ............................ CGATCCATGCCGGCACCGGCGGCGGCGAGGGCT 1079236 28 100.0 33 ............................ CCACAGCCCCAATTCCCTGCCAGCTCGCTGCCG 1079175 28 100.0 33 ............................ TCGCTGCCGCTGCAGCTCTTTGCCGAGCAAGCC 1079114 28 100.0 33 ............................ TGTAGTGTATTTCTTCCCACCCGCCGTGGTAAT 1079053 28 100.0 33 ............................ CCTGGAAGGCGAGCTGATCCAGCTACAGAACGA 1078992 28 100.0 33 ............................ CTTGAACAACCCGCGCTCGAACTCGAACACGAG 1078931 28 100.0 33 ............................ CTTGAGGCACAGCACCAGGAGCGCCTCAGCGAA 1078870 28 100.0 33 ............................ TTGAGTCCATTGAGGTCACCGGCACATTCTTGC 1078809 28 100.0 33 ............................ CTGGAAGAGAACCGGCACAAAGAGAGGCTAGAA 1078748 28 100.0 33 ............................ TCAGACTGCCACACAGGATAGCACCGAAGACGA 1078687 28 100.0 33 ............................ TGGGTCAGCGAGCGGGCGGGCCTGGCACTGTCA 1078626 28 100.0 33 ............................ TTTTATCAGCACCGAGTGGGGCAGTCTGGCGAA 1078565 28 100.0 33 ............................ TTATCGGAGTAGAGCCCGGCGCGTCCGATAGCG 1078504 28 100.0 33 ............................ TGGAAGGTGTGAGCTGGGCCGGGATGGTGGCGT 1078443 28 100.0 33 ............................ CTGCAGTCCGAAGAGCAGACCCCGGACGGCTCC 1078382 28 100.0 33 ............................ CCACTCCAGTTCGGCTGCGATGCCTTTCCAGAA 1078321 28 100.0 33 ............................ CCACGGGCGTTCCGCCATGCGGCGCGTCCCGAA 1078260 28 100.0 33 ............................ TAGGTCCGTGTGGATATGCACGCTCATGCCTGC 1078199 28 100.0 33 ............................ CGTGGCAACGCCGCTCAAGCACGACTTTGAAGT 1078138 28 100.0 33 ............................ CAGTGATGGAAAAACATTCGTGGCCGATATTCC 1078077 28 100.0 33 ............................ TCAATATCGCCGTCGGCCAGCCCGAGCAGGCCC 1078016 28 100.0 33 ............................ TTTCACCATCGAGGATTGCGCAGACGAACTGAA 1077955 28 100.0 33 ............................ TCGACCTTCCTCGGTCCAACTTCTCGGGTCTGG 1077894 28 100.0 33 ............................ CGTGGCTAGAAACTCGGGGTGGGCCTTCTCCCA 1077833 28 100.0 33 ............................ CGAAAAGACCGAGGCGCACGGTGCGCCGAGTGG 1077772 28 100.0 33 ............................ CCTGCCCCCGGGCAAGAAGCACAAGCCCAACGT 1077711 28 100.0 33 ............................ CCGGCAGGGAGTTGACGCGGGATGCCCAGGGAG 1077650 28 100.0 33 ............................ CCTGACCAGCCAGCTATGGGCCAATGTCTACCT 1077589 28 100.0 33 ............................ CCTGCCGGGGCAGATTGAGCAGTTTGCCTCCGG 1077528 28 100.0 34 ............................ CTTTACCCCTAAAGCAACTGAAGCAACTGACTTT 1077466 28 100.0 33 ............................ CGTCCAGCGAATCTCCTGCGCGCCGCTGATATC 1077405 28 100.0 33 ............................ CCTTAAGCAATTTGGCATTAACGCCAATCGCGA 1077344 28 100.0 33 ............................ TTACCGTGATCGAACAAGCGCAACATGCGGCCG 1077283 28 100.0 33 ............................ CTAGAGCGCGAGATGGAAGAGGCGCACCAAGAG 1077222 28 100.0 33 ............................ TCGGACACCTCCACGTACTGGAATACGCTCTCT 1077161 28 100.0 33 ............................ GTCGAGGCGCAGAATACCGGCGGCGGCCTCGAG 1077100 28 100.0 33 ............................ CACCGCCAGCGCGCAGGAAATGGGCGATAACGG 1077039 28 100.0 33 ............................ CGGCAAGGGGTTGCGTTACGGCTTAGTGTTGCT 1076978 28 100.0 33 ............................ CTCCAGCGTACCCCCCGGCGGAATGATGCGCTT 1076917 28 100.0 33 ............................ TTTGGACCATCATCCACTCTGCACGAGTTTGTT 1076856 28 100.0 33 ............................ CCGGGCTCAAGCCGTACCAATCATCTAAAGGGT 1076795 28 100.0 33 ............................ CTCCCGCGCCTGGCGTGTCAGCAGCCCGACGCG 1076734 28 100.0 33 ............................ CTCCTCCGGGGACTCCCACCGGCGCACGTTGGC 1076673 28 100.0 33 ............................ CTTGACGCGGCATCGAAGCAAGAGTTTATCCGC 1076612 28 100.0 33 ............................ CTGGGCGAGATCCCGCTGCCGGGCCTGACCACC 1076551 28 100.0 33 ............................ CTCGCGGACGGACACCTTGCCGTGCAGCACCTG 1076490 28 100.0 33 ............................ CCACGCAGACGACGAGGGCTACTTCAAGGCCCA 1076429 28 100.0 33 ............................ GGCAAGCAGGCAGAGAGCCGACTGAAGGAGTAT 1076368 28 100.0 33 ............................ TGTGCCCCGCCGCGTGGGCGGGGCTGTTTTCTG 1076307 28 100.0 33 ............................ CTGGTCGGTGAGGATCGCATCGATCTGGCCGCT 1076246 28 100.0 33 ............................ CTACCGCGGGCAGCTGATGGTGTCGGTCTGGAA 1076185 28 100.0 33 ............................ CAGGGATGGGGGGCATACTTCCTCCTGACCTCG 1076124 28 100.0 33 ............................ CGAGTTCGACGAGGAGTTCCTGGCCCACCTGGT 1076063 28 100.0 33 ............................ CGTTCACCTCCCGGCTCGGCCACCCCGCGCCAA 1076002 28 100.0 33 ............................ CGCGAGGCTGGTCGGTCAAGCTGTACCCTCGGC 1075941 28 100.0 33 ............................ CTACAAGCCCGGGGCGGTGCCGGTCGCGTGGTG 1075880 28 100.0 33 ............................ CAACCCCAGCAGCCCGCTCGCTCACCCGAGCGC 1075819 28 100.0 33 ............................ TGTCGTTGATCTCGGCGCGCTGGTATTCGTTGC 1075758 28 100.0 33 ............................ CTCCGCAACGCGCACCTTGCCGTGCAGCACCTG 1075697 28 100.0 33 ............................ TCGCCCGGCCCGGACCTCCAGATTAGGGTTCTG 1075636 28 100.0 33 ............................ CGCAGCTGCATGATCTCGAAAGGCGTCCACTTC 1075575 28 96.4 33 .......T.................... CCAGGCGGCACCAGGTACGGTCTCAGGCTTGGT 1075514 28 100.0 33 ............................ CTCGGGCCATCTCCTGCTCCTCCGTGCTGCCGT 1075453 28 100.0 33 ............................ CCTCTCCACCTGGGCGATGATCCGGCCCCGGGT 1075392 28 100.0 33 ............................ CGGTGTGTGGCTGGTTGTAGGGGATGACGGTAC 1075331 28 100.0 33 ............................ GCACCGCGGTGAGGAAGTGGAGGTATGGTCACA 1075270 28 100.0 33 ............................ CTTTGCTGAGGCGGTCGATCCGTACCAGCCGGG 1075209 28 100.0 33 ............................ CCGGCACCGAGTGGCCAGCAGCCTGGTGGTCCA 1075148 28 100.0 33 ............................ TGGAGAGGCTGGTCTTGATATCCAGAAGACGGA 1075087 28 100.0 33 ............................ CCCGCAGTACCCGACCCTCCACATTGACTCCGA 1075026 28 100.0 33 ............................ TGAGGCCGAGTCGAACCCGGAAACCTGGTACTG 1074965 28 100.0 33 ............................ CTGAAGGGGTCAATAATGGATACTTGCCAACTC 1074904 28 100.0 33 ............................ ACAGGCCCACGGCAGTCAGCGCCCACTTGATCC 1074843 28 100.0 33 ............................ TCTGTTTCTCCGCGCTCCTGCGCCAGTCTTGCA 1074782 28 100.0 34 ............................ CCGAGTGAGGGCCGGCATCAGGTGTGTTTCCTGC 1074720 28 100.0 33 ............................ CTTGTAAATCGTTTCCTCGAACTCTTCGGCATC 1074659 28 100.0 33 ............................ TTGACCCCAAGACCCCAACCCGGACAACCCGGC 1074598 28 100.0 33 ............................ CGGTGGGCGCCGGTGCCCGAGGGTCCCGCCCGG 1074537 28 100.0 33 ............................ GATATCACCCGTCGCTAGCTCCTCGGGATACCA 1074476 28 100.0 33 ............................ CATTGCAAGTGCTTTTCCCCGGTGTAGTCCCCG 1074415 28 100.0 33 ............................ CCTCACGCAGCGCCTTGATTTCCTGTTCTAGCA 1074354 28 100.0 33 ............................ TAGTTTCACCATCATTACTCACCTCCACCTTAA 1074293 28 100.0 33 ............................ TCTGCAGTACGGGTGCGAGCACCTGCGCCGGCT 1074232 28 100.0 33 ............................ CCGGGCCAAGTTTCCCGGGGCGGCTAGCGTGTT 1074171 28 100.0 33 ............................ CTCGCCGGTGGACTGCGTCGGCGCCTGAGCCTT 1074110 28 100.0 33 ............................ TCTATTAGCCAAGCCCCACTCCGGTAGGGCCTC 1074049 28 100.0 33 ............................ CCGGAAGCCGGACTGGTTGATGAGGGTGGTGAC 1073988 28 89.3 0 ...........C...........C.C.. | ========== ====== ====== ====== ============================ ================================== ================== 93 28 99.8 33 GGCTCCCCCGCGCCTGCGGGGATAGACC # Left flank : GCGAAATCACCGTCCCGTTGGCATTCCAGGCCGCCCGAAAGGTTCTTGACGACCCGACCCTCAGTATCGAACGCACCTTGCGCCGAGACGCGGCGAGCGCATTTCAACGCCATAAAGTCATCCCGAAGATGATCGATCGAATAAAGGACCTGATCAATGCCGATGACAATGGTCGTAACACGTAACGTTAGTGACCGCACCCGCGGCTTCCTCGCATCCTCCATGCTGGAACTCGCGCCGGGTGTTTACAGTGCACCCCGCCTGTCCGCTGCCGTACGCGTGCGGATCTGGAACGTGTTGGAAGACTGGTGGCCCTATGAGCAAGACGCCTCCGTCATCATGGTCTGGGCGGATCAAAACACACCTGGCGGACAGGCTGTCGCAACTCTGGGCATGCCCTCAGTAGCCCTTGAGGAGATTGATGGCATCGTGCTCGCGCGCCGCCCAAATTAACACTCGGTCTTTAACAATTCAGTAAATTCAGCCTATTATCGTCTAGA # Right flank : CCCAAGACGGCGATGCTGGACAGGGGACGGGAACAAGAATGAGGATGGCAGGTGCGCCATCCGGCAAGCTAGCCCACCCCGAGACACGCGCTGCAGAGCACTGGAGACCGGTCCGCTCCGTACTCGGATCGGGCTATGCACTACGCGCGGGAAGGCAAGAATGCTGCTTGCCGAACACAGCAATGGGACCGAACTAGGGAGCATCGTAAGCCGCCGCACCGGCCCGATGGCCCGGCGCCGGTTACGGGGTGCGGCCCACCGACGCCTTCGAAGGCCCAGTATACCAGCCAGGACGCTGAGAGATAGCAGGAGCCCAGGCCGTCCAAATCACCGCAGACGACCTCAAACCCCGCCAGGCGCTGGTCTCAAACCATCGCCTCCGCCATATTCCCCTTATCCTCCAACCACCGCCGCCGCTGCGACGCATTGCGCTTGCCCAGCAACTGGGCCATCAACGCCTCGGTGGCCTCGGCGTCGTCCACCATCAATTGCACCAGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCGCCTGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //