Array 1 51-323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWM01000123.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N37910 N37910_contig_126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 112 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 173 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 234 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGTTGCGCAGCCATTGAGCTGCAAACGGATCAAG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 335-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWM01000018.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N37910 N37910_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334 29 86.2 32 .ATCG........................ GCGACATCAAAATCTATTTTTCATTCTATCTG 273 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 212 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 151 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 90 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCTGGCGCGGGGAACACGGGA # Right flank : G # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7733-6302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWM01000075.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N37910 N37910_contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7732 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 7671 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 7610 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 7549 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 7488 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7427 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 7366 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 7305 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 7244 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 7183 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 7122 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7061 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7000 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6939 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6878 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6817 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6756 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6695 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6634 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6573 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6512 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6451 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6390 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6329 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTCGTTTGTAGCCGAAAACCGGCTGGCGCTGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66400-65332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWM01000019.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N37910 N37910_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66399 29 86.2 32 .G.ACT....................... GCTGAGATAATTGCCGATCATCTTGAAGACAT 66338 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 66277 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 66216 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 66155 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 66094 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 66033 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 65971 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 65909 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 65848 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 65787 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 65726 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 65665 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 65604 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 65543 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 65482 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 65421 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 65360 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATCATATGCGGTTTATCCCCGCTGGCGCGGGGAACACGCCAACTGAAATGTTGCAAGTTGATTTCGGGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGAGGATCGCC # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //