Array 1 481824-482943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCQ010000001.1 Prevotella denticola strain SCHI0021.S.9 Contig_1_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 481824 47 100.0 29 ............................................... TTTATGATCTTCTATGTAACTCTCAAGTT 481900 47 100.0 30 ............................................... CTCTTTGCGTGATAAACTTTAGTGAGCTGG 481977 47 100.0 30 ............................................... AGCGAATTCAAACGAACACCAAGAAACCTC 482054 47 100.0 29 ............................................... CAAAGCAAAACTTATTGAGGCACTTGATA 482130 47 100.0 29 ............................................... TCTTTCCTTTCTTAGTAGTTATCACACCT 482206 47 100.0 30 ............................................... TGTGAAAGCATTGCACACTTCTTTTCCTGC 482283 47 100.0 30 ............................................... AAGGAAAACGGATATACCGATGTTATGACT 482360 47 100.0 30 ............................................... AAAAGCGTAATAACACACTGACCAACACAC 482437 47 100.0 30 ............................................... ACACGTTGAACGTTTGTCCGTCTCCATAAG 482514 47 100.0 29 ............................................... AGATTTGTCGTGTCGTCTATAGAGTATGA 482590 47 100.0 29 ............................................... TGGAGAAAATACCCTACTTACCACCTCAA 482666 47 100.0 30 ............................................... TTTTCTCTATTTTGTAATGTGGTTCTACTG 482743 47 100.0 30 ............................................... TTTCGTATCTGGCCGTTACAGAATGATGTT 482820 47 100.0 30 ............................................... TTCTCCACCTCGATACCGGCAGGAATGCCC 482897 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCCGGCACTTATGGAGTTGCTGGCAGACACCGGGCGTGCTGACGGTCCGCACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGGGGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGAATCATGCTGTTTGAGTTTTATCGGACAGTATCCGATAAACATAAGTGTAGGAAACGGAGATGATTTATGGATTCGGCAAACGATCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACGCATTCAACTGAAAGCCAGCTACGCATTCAACTGAAAGCCAGCTACGCATTCAACTGAAAGCCAGAAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAAGTTTACAAAGTCGTCCGTTTGGTG # Right flank : TGTCAAGCATTGCCATACGACGCAACTTCTGTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 33-464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCQ010000008.1 Prevotella denticola strain SCHI0021.S.9 Contig_8_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 33 47 100.0 30 ............................................... TTTTCTCTATTTTGTAATGTGGTTCTACTG 110 47 100.0 30 ............................................... CCTCGTAATTGTTCAAGACGAGCTGCTCAT 187 47 100.0 30 ............................................... TTCTCCACCTCGATACCGGCAGGAATGCCC 264 47 100.0 30 ............................................... TGTCAAGCATTGCCATACGACGCAACTTCT 341 47 100.0 30 ............................................... TTTCGTATCTGGCCGTTACAGAATGATGTT 418 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ATTTCTCCACCTCGATACCGGCAGGAATGCCCG # Right flank : TAAGAAATAAGTATTGCTCTGATTTTCAGTTAGTAATATTGTTTTGGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGCGTCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTGCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAAGCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCAAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //