Array 1 185147-184203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBO02000012.1 Dickeya fangzhongdai strain S1 Dickeya_fangzhongdai_S1_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185146 29 100.0 32 ............................. GATTGAAATTAGAGTTTGTCGTACTTTCCCAA 185085 29 100.0 32 ............................. GCTGCTGTTAAGCCGTTGAGCCACTTCAGCAG 185024 29 100.0 32 ............................. TCTTCGTACAGCGTCAGGATGTCGTTGTACTT 184963 29 100.0 32 ............................. GAACCATCACAGGAACCCCCCTTGTCATAGCC 184902 29 100.0 32 ............................. ACCTGTTAAACGGTCTTTAAAGGTGGATATAT 184841 29 100.0 32 ............................. ATCGATTTCAAAATTTACGGGGTGGGGTGTCG 184780 29 100.0 32 ............................. GGAAATTGCCTCATCGAACTGCAGCTGAATGC 184719 29 100.0 32 ............................. CGCTCTTCGCTGACAATTTCATTTGTTAATTC 184658 29 100.0 32 ............................. TAGACAGCGGCCATGCCGTACTCCGCGGACTC 184597 29 100.0 32 ............................. TCAGCGCTCTATTCAGACCATACTTGATAACA 184536 29 100.0 32 ............................. AAAACTCTGGAACAAAACAGGGCGTAGGCGAC 184475 29 100.0 32 ............................. AGACCATTCGACTGCAGGACGAGCGAGCGAGG 184414 29 100.0 32 ............................. TTTGCGCGCACCAGCGCACGCGCGACCGGTGT 184353 29 100.0 32 ............................. AAATACCGCGTACTTCTGAATCGCGTCGATAC 184292 29 89.7 32 ............AG..........G.... ATGCTCAACATGGCGGAATGGTGGCTGTGCCT 184231 29 89.7 0 ...........AT............C... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATGCTTTTAGA # Right flank : TTGATTAAGATAGCCTGATCGGCGACCGGTTACGGAAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAGCTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15885-14818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBO02000029.1 Dickeya fangzhongdai strain S1 Dickeya_fangzhongdai_S1_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15884 29 100.0 32 ............................. CCTGATTCTTCGCAGTGAATCATCTTCATATC 15823 29 100.0 32 ............................. TAGCGTATGCTGGATTGATCTGCTCCGGTGGG 15762 29 100.0 32 ............................. TCGTCGTTCCCACTCCTGCCGCCCCTTACGGA 15701 29 100.0 32 ............................. CATACTACGAGGCTTGCGGCGTATCAGCAGGA 15640 29 100.0 32 ............................. GCATACAGTTTCCTCAGCTCCTGCATGGCGTG 15579 29 100.0 32 ............................. GTATAATTTGCTCAATTCCATACGGAGAGGCC 15518 29 96.6 32 A............................ GCTTGTATCATTACGTTTTTTTCAGACAGCTC 15457 29 100.0 32 ............................. GAACCCTGGCCGCTGCACGTGGGTATCCAGAG 15396 29 96.6 32 ............................A GTGGCGGAGACACAATATGCAGGAGTGCAATC 15335 29 96.6 32 ............T................ CACAATAACCGGCAATAAATCTACTGCGATCG 15274 29 96.6 33 ............T................ TTCCACTTCGCGCCCAGAGCCGGTACGGTCAGC 15212 29 96.6 32 ............T................ GAATGATTAAAGTACCTGTTTTTAAAAATGTA 15151 29 96.6 32 ............T................ GCTCTTTCAGTCGTTCCAGAAGATAATTCATA 15090 29 96.6 32 ............T................ CGGGATATTTCTGTCGCCGATAGCGTCTTCGT 15029 29 96.6 32 ............T................ ACGTTGTCGTTGCTGTAATCCGTCTGCTCGAC 14968 29 96.6 32 ............T................ CGACTGACAGTAAACCGCTCGAAACTGCTGAT 14907 29 100.0 32 ............................. GGTCACGCGCTGGTGTCGTTTATGGATGGTAC 14846 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCCAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTATAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCCGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTGTTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTATTTAACAACATAAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAGTCATTAAAAAACAAGTATATACTTTTAGA # Right flank : GCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTAACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTAGTGTTCCC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154392-153822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBO02000009.1 Dickeya fangzhongdai strain S1 Dickeya_fangzhongdai_S1_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154391 28 100.0 32 ............................ AACTTGATTATCAAATTCACCTCTTTTAGCTC 154331 28 100.0 32 ............................ TCGGTGAAATACTTCTCCGGTATTGAGCGAAT 154271 28 100.0 32 ............................ ACACCTACCGCTACTGGTCCGCACATTATTTT 154211 28 100.0 33 ............................ CGCCCGGCGTACAAACCCGCCTTGCGCGGGTTT 154150 28 100.0 32 ............................ TGACCGCTCCGATGAAAACCAGCGGAAGCCGT 154090 28 100.0 32 ............................ GTGCCGCCGATGTGATCGGCAACCTTGAAAAG 154030 28 100.0 32 ............................ ATGACGCTATCGAGCTATAACGGCGGGCTGGG 153970 28 100.0 32 ............................ CCCGTCAGCACGGCGCGGCCGATATCCTCAAG 153910 28 96.4 32 ............G............... AGTCAGGAGTTACACAGAACTGTTCTGAAAGG 153850 27 82.1 0 ....T........C.........-..CG | GG [153827] ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTCTCCAACGGGCAAACGTTTTTATTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCGCTACA # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCTTGCCGCGCCGGACAAAAACGCCGGGAGCGTTTTTGAACAGTGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //