Array 1 293311-289859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYX01000003.1 Bifidobacterium adolescentis strain AF14-56 AF14-56.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 293310 33 100.0 35 ................................. AGTTCGATAGTCACCGGGTCACTCGTGCTACCGAT 293242 33 100.0 34 ................................. CTCAGCCCACGTTTTAAACTCGTCGGTCGGGGAA 293175 33 100.0 33 ................................. GTAAACGAAAGCCCCATATTAGACACGGGCGCA 293109 33 100.0 34 ................................. ACGTTCGACGTGACCGTGTCCACGCCGGAGACCA 293042 33 100.0 35 ................................. ACCGTTCTTCAGATCATGCACAGTCAGGCCGGAAG 292974 33 100.0 33 ................................. TTGAGCTGGATGTTGAACTTGGCGGTCACGTCC 292908 33 100.0 34 ................................. ACCGATGGCGCTGGAAATGTTCAGCAGATCGCGG 292841 33 100.0 34 ................................. TGGCAGGGCGTCACCAAGAAACAGGACCAGGACA 292774 33 100.0 34 ................................. TTCTCGACGGTCGCGTTGACCGCGCTGGCGACCT 292707 33 100.0 35 ................................. CTCTCCCCGATGATGTTTTTTGTTGATGGGTCGCG 292639 33 100.0 35 ................................. TCAATAAGGAGTAACACAATATGGCCACCACAGAC 292571 33 100.0 34 ................................. CCGATGGCGTCACTCCGACGAACGTCAAAATCAC 292504 33 100.0 34 ................................. CGCTCGTGTCTGAGGAGGACGCGGCCAAGGCCGT 292437 33 100.0 35 ................................. GTCCGATAAAGGTAACAGCGTGTCGCATACGCTCG 292369 33 100.0 34 ................................. CAACAGCATGCCGACGAACAGCAAACCGAATTTC 292302 33 100.0 34 ................................. CAAATGTCCTGTGCGCTTGTCATATTACTGCCTC 292235 33 100.0 33 ................................. GCCATCGTACAGTTCGCGAACTCGATACCGTCC 292169 33 100.0 34 ................................. ATATCCGCGAACTGCATCGTTTGTTGATTGCTCA 292102 33 100.0 35 ................................. ATCAAGGCCGCAACGAAGAATGCCATCGTTGTCGA 292034 33 100.0 33 ................................. AAATCATGCAAGTCGTAGAATTGCAGTCGCACA 291968 33 100.0 34 ................................. CTTTCCAGCAGGCTAATAATTCACTCGACTTGTC 291901 33 100.0 35 ................................. CCTGATTTCAACGCGCCGGACGGCATCACTGTTGC 291833 33 100.0 35 ................................. GATACCGGACGGCATCGCGCATGATGCGAAGACAG 291765 33 100.0 34 ................................. GCTTGGATGGTCACGGCGGTGATTCGCTGCTCTT 291698 33 100.0 35 ................................. GTCGTGTCCGAAATCAACCAGCACGCCCAGTACAA 291630 33 100.0 33 ................................. TTGCTCCTTGCTTGATCTGATAGAAAGACGGCG 291564 33 100.0 33 ................................. GTGAATATTATTTCGGCATGAAATACAGGCGCG 291498 33 100.0 35 ................................. CGGCGCGGGCGCTGCCGATGACGCGGAGAGCCGCA 291430 33 100.0 35 ................................. GCCGACGTGCCGCCGGTCGGCCGGCTCGCCATCGT 291362 33 100.0 33 ................................. ATTTTTCAAGCACTCGCAACACTCGCAGACTGA 291296 33 100.0 34 ................................. GTGTTGGTGGACTCCAATTTCACCGGCTTCGGCT 291229 33 100.0 34 ................................. TCAAGGAAGGAACCATGGTCATCATCGTCGTAGG 291162 33 100.0 33 ................................. CCACTGGCGTTACGTCCGCTGCTCGCCAGGCAA 291096 33 97.0 33 ......T.......................... TGGCTGGTCGGCTTCGGTGATGGCGGCGATGAG 291030 33 97.0 34 ...A............................. ACGGGAATGAGGAACGAGAAATCGATCAGCAGAC 290963 33 100.0 33 ................................. TGTGAAAGTCACGCGATAATCATGACCACTCGA 290897 33 100.0 34 ................................. ACGGACGTGCAGCCGATGAGCATCGACGAGATGC 290830 33 100.0 34 ................................. TTTGTATGCGGTCGCGGCCACGTCCTGGCTGTGG 290763 33 100.0 35 ................................. CATCCAAGATGCGCCGGTATTGCGGCTTGGCTTCG 290695 33 100.0 35 ................................. CGACTGCGGCAGAGGACTCGTGACGAACGTGGCGA 290627 33 100.0 34 ................................. CTGGATAATCTTCTCCCCGATAATCCGGCCATAC 290560 33 100.0 34 ................................. CATAGCGCAGCATGTAGTCGCCCGCCGCCGCTAT 290493 33 100.0 33 ................................. ACTGTGTTTATCCACTGTTGGATGTTCATGAGA 290427 33 100.0 35 ................................. CGACTGCGGCAGAGGACTCGTGACGAACGTGGCGA 290359 33 100.0 34 ................................. TTATTGACCGCCGTCTGACGTATGCCGCGAAGCG 290292 33 100.0 35 ................................. ACCGGGGACACGATGTCACGCGATTAAGGCGACTC 290224 33 100.0 34 ................................. CACACGTCGTATACCACCCATTCGGAGAGTGGAA 290157 33 100.0 35 ................................. ATCGACCCGACCGACTGGACCACCGTCAACGACTC 290089 33 100.0 33 ................................. GGAGAGGCCATCCACACCGGCACTCCAGTCCTG 290023 33 100.0 33 ................................. CAATGGGATGAAATGTTGGAAACCACCAATTCT 289957 33 100.0 33 ................................. ACGCCAGCGAACGACCACACGATTGTCACGACC 289891 33 97.0 0 ....T............................ | ========== ====== ====== ====== ================================= =================================== ================== 52 33 99.8 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGACACCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCTGCATAGGCGGCTGGTCTCCAACAGAAACTGCGCCGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTCGTCGATCGGCATGTATGTGTTTTGATGCTCCTATACATTGTCAAGTGTTTGGGCGTGTTGTTTTGGGTCGGTGATGGAGTGAATCCATTGGATGGCCCGTTGTTCGAGTTCGGGCAGGTCTCGTCTACCTCGTTCGATTTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //