Array 1 65446-63481 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETI01000020.1 Salmonella enterica isolate STY102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65445 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65384 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65323 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65262 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65201 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65140 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65079 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65017 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64956 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64895 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64834 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64773 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64712 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64651 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64590 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64529 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64468 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64407 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64346 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64285 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64224 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64162 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64059 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63998 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63937 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63876 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63815 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63754 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63693 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63632 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63571 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63510 29 96.6 0 A............................ | A [63483] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83070-81577 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETI01000020.1 Salmonella enterica isolate STY102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83069 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 83008 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82947 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82886 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82825 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82764 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82703 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82642 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82581 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82520 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82459 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82398 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82337 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82276 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82215 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82154 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82092 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 82031 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81970 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81909 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81848 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81787 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81726 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81665 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81604 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //