Array 1 265475-264907 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHTH010000001.1 Streptococcus pyogenes strain K5690, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    265474	    36	 100.0	    31	....................................	CAGCGCTTCAGTAAGAACTTGAGAAAAGTTG	
    265407	    36	 100.0	    30	....................................	TTACTCCAATAAATCGATTGACGAATCATT 	
    265341	    36	 100.0	    30	....................................	AAGGAGGTTCTCGTTTCTATTTTTTAATTT 	
    265275	    36	 100.0	    30	....................................	AAGACCCAATTCAATAAACATGCTTCCTAA 	
    265209	    36	 100.0	    30	....................................	AAGGAGGTTCTCGTTTCTATTTTTTAATTT 	
    265143	    36	 100.0	    30	....................................	CTTACGAGCTGAGTTTACTCGTAGTAATCA 	
    265077	    36	  97.2	    30	......T.............................	TATCGTTAAAAAACAGAAAGGCGGTGGAAA 	
    265011	    36	  97.2	    30	......T.............................	CACTAGACATCTCAACATCTGGAACGGGAT 	
    264945	    36	  94.4	     0	................A...............T...	|                              	CT,T [264910,264916]
==========	======	======	======	====================================	===============================	==================
         9	    36	  98.8	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATTACAATTCTGGAATTGATTAAATGTTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  ATTGCCAATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACTTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGAGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCTTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAACTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAGG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.62%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,-0.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
//