Array 1 314609-315350 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMW01000011.1 Listeria monocytogenes strain NRRL B-33185 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 314609 29 100.0 36 ............................. ACCTTTATCAGTGCCGCGGATAACTCACCAGCCGTA 314674 29 100.0 36 ............................. TCAAATACATGTCTGAAATGATTTCGGACAATTTTA 314739 29 100.0 34 ............................. TCACTTCTTGATAAAGCTTAATCGATTTTTCCAG 314802 29 100.0 36 ............................. ACGATCTGCCGCACCAAGGACAATATTCGACTGGGA 314867 29 100.0 37 ............................. ACTTTGTAAGTGGTATAAACAATTAACGATAACAAGA 314933 29 96.6 35 ............A................ TTTGCAGGAATCACTTTACCAGTTGTTGTATCTTT 314997 29 100.0 36 ............................. CCCGGAAAGTCTGGACTTAATAAAGAAAAGAATCTT 315062 29 96.6 37 ..............A.............. ACAGTTGCATACTTAGCAATTCTTTTCATGCTGTCCT 315128 29 96.6 36 ..............A.............. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 315193 29 93.1 36 A.............A.............. CTTGCAAAAAACACACGAACTATAGCAATTGTGCAC 315258 29 100.0 35 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTACACT 315322 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 97.1 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 330955-332413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMW01000011.1 Listeria monocytogenes strain NRRL B-33185 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 330955 29 100.0 36 ............................. TGAAATTTTCGAAAAGCGCTCGATTTTTTGCTAGTT 331020 29 100.0 38 ............................. GTCCATCGATATTCGTTTTACCTACTCCGGCTATATCT 331087 29 100.0 36 ............................. AGCTGCTGAAATCATCTAGCTTTAGGCCCTCCTCTA 331152 29 100.0 36 ............................. CTCAATTAAAACAGGGATAAACTCTTTGATTTTTTG 331217 29 100.0 37 ............................. ATTTTCGATCGAACCAATCCGGAAGTATTTCAGTTTT 331283 29 100.0 36 ............................. TTAGAAGATAAAAAATTCCACGTGGACGCACATTCG 331348 29 100.0 35 ............................. CTCATTATTGAAGCGGGTGTCGAATTACTATTCGC 331412 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 331477 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 331541 29 100.0 35 ............................. CCATTAATCTCTATTCCAGAGTTATCCAATGTCAA 331605 29 100.0 34 ............................. ACAGATGGTCGAGCTTATCAAGAACAGTTTCTTC 331668 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 331734 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGCCATT 331798 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 331862 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 331925 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 331988 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 332054 29 100.0 37 ............................. TTTTTGTGCAGTTCCAGCTGTTACAACAACTAAATCT 332120 29 100.0 36 ............................. ACCAATGACCACAAAGCAAAGCAATTGGTGCTGTTA 332185 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 332254 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 332319 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCTGTTTTGA 332384 29 93.1 0 .......................A....C | C [332407] ========== ====== ====== ====== ============================= ======================================== ================== 23 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAATGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //