Array 1 30232-26795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFP010000010.1 Porphyromonas levii strain DD51 JD8_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 30231 30 100.0 37 .............................. ATTTTTACAGCAAAAACGCCCGCTTTTGCCTGCTGGT 30164 30 100.0 35 .............................. CCCACATCGCTAGACGCACATTTATATCTAACGCA 30099 30 100.0 35 .............................. CTCCTTGTGCTTGATGAGGCGGATAAGCTTGTGGA 30034 30 100.0 34 .............................. GAAGGTCGTATCGGTGCGAGTGTTAAGTACGATG 29970 30 100.0 34 .............................. ACGGCAATCACCGACTTATGCGATGCCCCCTTAG 29906 30 100.0 34 .............................. TCAGAGGAGGAGCGCAAGATCGCACTAGCTGGAG 29842 30 100.0 36 .............................. TTCTGCCGCACTGTCACAGTGTATCTCCCTCTGTTG 29776 30 100.0 36 .............................. GCAGTACATTGCGTATTTGCCCTGTGAGGGCGAGCT 29710 30 100.0 35 .............................. TTTAATACTCATTGCCTTGCTCCTTGCCCTTGCAG 29645 30 100.0 36 .............................. TCAGGAAACATGGTTAGCATAAACTTCCCCTGCACT 29579 30 100.0 35 .............................. TCTCCTCAAACTTACGCGCAGGGATATCCTCTATC 29514 30 100.0 35 .............................. TTCGAACGCTAATCGAACAGCGTACGAATACCCCT 29449 30 100.0 35 .............................. TTTCCTGTAATCAGCCATTCTATGTTAATATCATC 29384 30 100.0 34 .............................. GTTTGGATCGCTCTGAATACTCTGCTTTATCGGT 29320 30 100.0 36 .............................. GCATTAATCATCTGTAGCAGGTCTTGCCCCATCAGC 29254 30 100.0 36 .............................. TCCTCTTGATGAGCGACACAGATAACACAGCTAAAC 29188 30 100.0 36 .............................. AACGCTACATTATCCTTGATTATGTACGCTAGTATC 29122 30 100.0 36 .............................. AGCATTAGAATGAAGTCATAAGAATACAAATAAAGG 29056 30 100.0 36 .............................. GCTTACACTCTATCCGTAGCTGACCTGAGAAACCTG 28990 30 100.0 36 .............................. GAAATTGCCAGCATCTTTCATATACCAGCACTCTGC 28924 30 100.0 36 .............................. GATTGTATCTCTTTTAGGAGTGTCGGGTCTACGTCC 28858 30 100.0 36 .............................. GTCTATTCCCCTCCACCTCTGCTTCACCCAAATCGG 28792 30 100.0 36 .............................. GTCATTTTAGTTAGGCGGTATACGGTTAGAGCTTGC 28726 30 100.0 36 .............................. AGAGTGAATATATCACACTTGCCCCTATCTCTGTTT 28660 30 100.0 35 .............................. GTCTATACCAAATTGTTCCCTAACCTTGTCGGTTA 28595 30 100.0 35 .............................. GTGCTATCTGTTACGCTAAAACCCTGCTTGCCGTC 28530 30 100.0 35 .............................. AGCAAAGTTTGTCTTCTGGGGCGATTTTATCATCG 28465 30 100.0 36 .............................. ACGATAACGAAGAATAAGCGCAACAACAAGACGTAC 28399 30 100.0 35 .............................. AGATAAAAGACACGGTGAGAGGTAACGGCACCTCT 28334 30 100.0 35 .............................. AAGTTGGTCTTGATGCTTATTGTGTGCTGACCCTT 28269 30 100.0 37 .............................. TAAGTATATATAAATGTATTCGTCAATCCAATGCCGT 28202 30 100.0 36 .............................. AGGCTATAACCTTTTTACAGCAACCCACCAGCACCG 28136 30 100.0 35 .............................. ATGGAATGTCCGTTACCAACCCTTTAAGGGATTTA 28071 30 100.0 34 .............................. CTATGAGTACCGCTACGAGCTTGGTGGTGCGATG 28007 30 100.0 36 .............................. CCTACATCTACGACCGCTACGGCATCCCTAAGCCAG 27941 30 100.0 37 .............................. GAAGGAGATACGATTCCGTAACAACCTCGTGCATCTG 27874 30 100.0 36 .............................. ATAGAGCCTTGAGCATAACCTCTACAGCTCTAACCG 27808 30 100.0 36 .............................. TCTCGCTTTTTACATAGTAGTAGCTATTACCCTCGA 27742 30 100.0 35 .............................. TAATGACGGAGCAGACCAACCGACTACTGCGCATT 27677 30 100.0 35 .............................. CCAGCTGCCGAGGGGTAATAACGCTCTCAAAGAGG 27612 30 100.0 36 .............................. TAGAATAGCCTCCTCCTGAAACCGTTTCGTTAACGA 27546 30 100.0 34 .............................. AAGAGAGTGGCGCAAAGTACATGGAGTGACGAGA 27482 30 100.0 36 .............................. TAGCTCTTATCCATCTTCGCGAGCTCCTTCTGCAGC 27416 30 100.0 36 .............................. TGATTATGTTTTGTGACTCCCTCGCCCCCTTTCTCA 27350 30 100.0 36 .............................. TCAGGAAACAAAGAGCCTTGCACAAATCAACCACGT 27284 30 100.0 35 .............................. TAGACAATACCTTCTTACTCATAGCTTCAAAAATT 27219 30 100.0 36 .............................. GCTCTGTACGCAAACATCTTCGTTGAAGTCGCTAAA 27153 30 100.0 36 .............................. GTGAGAACACGCATCAATCTGCCACCTCCCAAGGCT 27087 30 100.0 35 .............................. CTTATACTTCTTTGGGTCGCTGCTGTCCGCTGGCA 27022 30 100.0 37 .............................. GATGTAGAGAGACTTCTATTTGAATACGATTACAAAA 26955 30 100.0 36 .............................. ATCGCAAGTACCTGAGTATCCACACTCTCATCCACG 26889 30 100.0 35 .............................. TTTTATCCTCTCGACTTGAGTTCTTGTTGAAAAAA 26824 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 53 30 100.0 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATAATATTTTCATCAAGACAAGAGGGGTGGTTAGACAAAGAGATTATGGGAATTGAGAAAGCATCTACCGATAATTTCTTGTGAGTATTTTCCTATTTCGAATTACACGCCAATGCGTAAGGATGATAGAGATCATAGACATTTCGAAAACTAATAATATCTTTGTTTGGGTCGCATCAGACTAATAGATGTAAATCATGGTTAGCATTTTAGTGCTCTGTAGGACAGTTCCCATATCATACAATATGTGGTGCGCATAAATTGCTCTATAATGATGGGTTATTCTCTAAATGTCTGTCGATACTGGTGTTCACTAGTATTTTAGACGGTCTATGAAAATAGGAGGAATATTATGTTATTGATAATCAGTAGAATGGACTGTTGTCGTAGGTGCACTCTTATTATACGATTAGGGTTCGACGACATCTTCCAAGCAAAAAGTGCCAAATAAATTTTCTAACAGACTTGTAACCAATGATATATTATAGTAAATTTGACGG # Right flank : TATTCGTCATCATCACGCACCTTATGTTCGATAGTTCTGAGAGATGGGGGGATTTGAGAGAGGGGGAGTGGTCGAATTCTCTAGCGCGAGCGGGGAAATTTATCTCTAGGAATAAAAATATTTATTCCTAGAGATAAATGTTTTTATTTGTGCAGAAAAGTAAATTTATTCCTAGGGATAAATTTGATGGTGAAGTAGACTATTTTTTTGCTGCTGTATATCAAGCGCTTGGGTGAAGGGTATTGCGCTGTAAATTGGTATATTTGTACGCTAATGTATAGGTGTGTATGAAGCTAAGGACTGAGGATTTAGTAAAGAAATATAAGAGTCGTACGGTGGTGAACCATGTCTCTATCGAGGTGGAGCAAGGTGAGATCGTGGGGCTTCTGGGGCCTAATGGCGCTGGGAAGACGACTACTTTCTATATGACGGTGGGGTTGGTACAACCCAATAATGGTCGGATTTTCTTGGATGATCGAGAGATTACCAAGGAGCCAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 80603-77053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFP010000001.1 Porphyromonas levii strain DD51 JD8_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 80602 37 100.0 36 ..................................... AAGGAGGAGAATTGCTTAAGAATATTACTATTCTTT 80529 37 100.0 36 ..................................... TTTATAGTTTTAAGGATTGGCTTGAGAGCCTCCTGT 80456 37 100.0 36 ..................................... TTTAAGCGTAACCGCCCAACGTGGACGTGTGTCCGC 80383 37 100.0 35 ..................................... TCTAGGGAGGAGAGGTTTTTTAGAATGCTTATATT 80311 37 100.0 38 ..................................... CCTTAAGTAGCAAATCCCCTCCTTCTAGGGAGGAGAGG 80236 37 100.0 39 ..................................... CCAACAAACCTCCTCCATCTAAAAATATGAATTTTCTTG 80160 37 100.0 38 ..................................... TGCACTCCTCCCCGTTCAAAGAAATCTGGGAGGAATAC 80085 37 100.0 33 ..................................... TATGTATAGGAGTTCCCGCAGCATTTTTTTAAT 80015 37 100.0 34 ..................................... AGAATCTCCCGCAGCGAACGGGGAGTGCACTCCT 79944 37 100.0 38 ..................................... TCTAAAATCCTCCCTTCTTATGCAGCTAAGTTTATTTA 79869 37 100.0 37 ..................................... TCCTTCCACTACTCTTCCAGTAAAGGCTGGATAGTTA 79795 37 100.0 36 ..................................... GAGGATCAACTCCCTCATTGCACGGGGAGTGCACGT 79722 37 100.0 36 ..................................... CCATACAGGCCCCAGATATTTCTATGCCCTTTCAAA 79649 37 100.0 33 ..................................... ACCGATAATCTCGCACTTGCCCTGTAGTATCTT 79579 37 100.0 36 ..................................... TGAACGCTCAGCAAGTTGGCCGTTCTCATAAAATTC 79506 37 100.0 37 ..................................... AGTTGGATCTACTACTGTTACAAGATCGTCATTTCTT 79432 37 100.0 32 ..................................... ACTATTTACTAGTCCATTGGCTTTATTGCGAG 79363 37 100.0 34 ..................................... TTATTTTATCTACGGTGAGCATAAGATTTATGCC 79292 37 100.0 35 ..................................... TCCAGAAGATTATCCACAGACACTCCAAGTTTCTG 79220 37 100.0 36 ..................................... ATCACCCACATAAGGAGTGATAGAGTTGTGGCAACT 79147 37 100.0 35 ..................................... ATGGAATCCTCACTTTTCATTCTTTCATCCCTTAG 79075 37 100.0 37 ..................................... CTTTTTGGATCACTTCTAAGAAAGGAGGTTTTAGAGT 79001 37 100.0 38 ..................................... TTGAAAGAGTTTTCTTAGATATCATGATTCCCTCTTCT 78926 37 100.0 36 ..................................... CCTCTTCTTCTGTGATTTCGACATGGAGGTCAGCGA 78853 37 100.0 35 ..................................... ATCTGGAAATTCTGCCAACACCTTTTGGAGGTCAC 78781 37 100.0 36 ..................................... CCCCGGCTCTAAGGCCGAGGGCGTAAAAATTATGGC 78708 37 100.0 39 ..................................... AGCTTCTGAATAGTCCAATTAACTGATTGGACTTATAGG 78632 37 100.0 38 ..................................... GGTTATAGGAAGGTTTACTTCCTTCCCATTTCGTTCAA 78557 37 100.0 36 ..................................... GAGAGGGAAATATAACCCCCCGGCTCTAAGGCCGAG 78484 37 100.0 35 ..................................... AGAATTTCCCTTAAGTAACGGGGAGTACAATCCTC 78412 37 100.0 36 ..................................... CGGATACAATATCCCCCATTACAGCTTCTACACTGC 78339 37 100.0 36 ..................................... TTGTTTAAGGCCTTGAGTAACAGGTCTCCACCTTCT 78266 37 100.0 37 ..................................... GTAGGGCGGTACTACCTTCGGGTAGTCTGCCTCCCAT 78192 37 100.0 36 ..................................... TACTTTGCAAATTCTCTTATCTGCAGTCATGATACA 78119 37 100.0 36 ..................................... TGGGAAGGTTGCTCTCCACGAGCGACAAACCCAAGT 78046 37 100.0 36 ..................................... TACTCACCAGGTTCAGAATAATATGTGTAAAAATCA 77973 37 100.0 35 ..................................... TGTCCTTATTGCTCTGTAGCAAGATATTCTCGTAA 77901 37 100.0 37 ..................................... CTTTATCATCTGTTCCAATATAGTGCCACGCACCATT 77827 37 97.3 36 ................T.................... TTATCGCCCTTCATCGGAAGTTCGATAATGTTATCT 77754 37 100.0 36 ..................................... TTTGACCAACTCTTGATTTGGTCGTAAACATTGCTC 77681 37 100.0 34 ..................................... ACCTGCTCACTATCTTGAAGCCCTGCTTCGGTTT 77610 37 100.0 38 ..................................... ACCGTAGACAGTTTGTCTACGGTAATTAAGAGGTTTAT 77535 37 100.0 38 ..................................... GCTTGAGGTGAAGAATTTTATTTCTGTTGCCAAGTGGT 77460 37 100.0 37 ..................................... GTAAGATTTTGTCTCCCTTCATTGGAAGTTCGATAAT 77386 37 100.0 37 ..................................... TTACATTCGTCTGTTCATAGCCCCATGAGCTATAAAG 77312 37 100.0 36 ..................................... TATAGCTTCTTCGAGCTTGTATTTATAGTAGTCTAG 77239 37 100.0 38 ..................................... CTAGTGAATGTGTCTCCTATTTCTTCCTTGACTTTCTG 77164 37 100.0 38 ..................................... TACAGCCTCTTCTAGACCAAACTGGTCGGTGGGGTAAG 77089 36 97.3 0 ...............................-..... | C [77055] ========== ====== ====== ====== ===================================== ======================================= ================== 49 37 99.9 36 GTCGGCGACCATATTCCATTAAAACAAGGATTAAGAC # Left flank : ACGATGGCACCTATAAATGGCTATACACAGGTATCACTCGTGCACAAAAAAGACTCCATGTAGCAGACGACTTCTATCTAGAGTAGTTGGGATGCTCGTCTGATGGTAGATCGCATCATAATGCTCTTGTAGCTAGTTGTGCTCATTGTACAGTCAGAGATAGGAATTGAGGAGCTGCAATACTATGAATGGTTTACTCGGCTGGGTATAGCCGAATAGAGCGATGGGTAATGGCGAGCTTACTTTCCAATAATGGAAAGATAACTTTCCATCGTTGGAAACTTTCCTTTCCATCGTTGGAAACTTTCCTTTCCATCGTTGGAAACTTTCCTTTCCATCGTTGGAAAAATACTTTATAGATTATGAGTATTGTTTCATATTGGATAAATTGGTAACTTTGCGCACTGAAACTAAGGGGTACTTTTGAGGCTCTTTTTCAGTTGAGAAGGGTCATAGACATTTCTCAATAATCTGATATATAAGGGGTTAGTATTTTACCT # Right flank : TGTATGTATATTCAGTGTATTATGGTAAGTGCATGAGTTTATTTATTAGTAGAATTTGTGCTATTGTCACCAATAATAGGTACGTTTGTAATGTTGTCGATAACAGAAGTAACCTATATTGTCGGTATTATTATGGATTTGATTCTAAACACGTTCGGCACCTCTCTAAGCCGAGATAATGAGGCTTTTGTAGTTCATCATAAAGATGGCAACCAAAGGCTACCAGTGGATGGTATCAGCGCTATTCATATCAGTCGTGGTGCTCAGATAACCAGTGATGCAGTGCTTTTGGCCATAGAGCATGAGATAGCGGTGCTTTTTATGGACAGGCAGGGTCATCCTATAGGTCGGGTGTGGAGCAATAAGTATGGGTCAATATCTACTATTCGTAAAGGGCAACTCAACTTTACCTTCTCTCCTGATGCCATCACGTGGATCAAGGGTGTCATAGAAAAGAAGATGGAGCATCAGCAAGCGCTTATCTTGGCTATGAGGGTACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCGACCATATTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //