Array 1 161064-159753 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTU01000007.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3305 NODE_7_length_245065_cov_5.10503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161063 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 161002 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 160941 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 160880 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 160819 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 160758 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 160697 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 160636 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 160575 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 160514 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 160453 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 160392 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 160331 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 160270 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 160209 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 160148 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 160087 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 160026 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 159965 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 159904 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 159843 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 159782 29 100.0 0 ............................. | A [159755] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCTCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171115-169196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTU01000007.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3305 NODE_7_length_245065_cov_5.10503, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 171114 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 171053 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 170992 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 170931 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 170870 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 170809 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 170748 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 170687 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 170626 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 170565 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 170504 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 170443 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 170382 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 170321 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 170260 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 170199 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 170138 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 170077 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 170016 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 169955 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 169894 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 169833 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 169772 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 169711 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 169650 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 169589 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 169528 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 169467 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 169406 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 169345 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 169284 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 169223 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //