Array 1 257-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADA01000047.1 Neisseria meningitidis strain Neisseria meningitidis isolate R855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 256 30 96.7 38 ..........................C... CCTTGGGATAACGGCAATATTCAAAGTTTATAAAAGAC 188 30 96.7 38 ..........................C... CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGAC 120 30 100.0 42 .............................. ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 48 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 4 30 98.3 40 CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Left flank : AGCTTCAAGCTTGGGGCGAACGCAACAACGTAACCGTGATTTCGCAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATTGTGCTGGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCACTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCACACGAAATCATCGTCGTGCTTGATGCCAATATCGGTCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACCGGTTTAATTGTTACCAAGCTAGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCCTCCGACCGCCCCGTCCCCGTCCGCTATATCGGCGTGGGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGAGCCGAAATGCCGTCCGAAAACAGCAGACCGATG # Right flank : ACCTTGGGATAACAGCAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Alternate repeat : CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 19167-18207 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADA01000034.1 Neisseria meningitidis strain Neisseria meningitidis isolate R855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19166 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19100 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19034 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 18968 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 18902 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 18836 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 18770 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 18704 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 18638 36 100.0 30 .................................... ATCGTTTCAGATTTCGGCCTTTGATTGCTG 18572 36 100.0 30 .................................... GACCGTCAAGCGATGCGTTGGTGGCTTTAG 18506 36 100.0 30 .................................... AAAAGAAGCAAATTCCAAGGAGCGAAAATG 18440 36 100.0 30 .................................... TCGCCCCCGAAAGCCCCGTCATCCTGCAAG 18374 36 100.0 30 .................................... AGGCGCGCTGCACAAAGAAGACGAAGAAGC 18308 36 100.0 30 .................................... TGCCTTCGACGGCTTCGCAGTTCAATACTT 18242 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //