Array 1 56500-57607 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZV01000056.1 Delftia sp. UME58 DE58_contig000056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56500 28 100.0 32 ............................ AGCCAGGGCACCAGGTCGCGGTAACAGAGGTC 56560 28 100.0 32 ............................ TGACCGAAGCGATCCAAGGCACTGCCAAAGCA 56620 28 100.0 32 ............................ GTTGTCCTGCCACGCGCCCGCACCATCGCTCA 56680 28 100.0 32 ............................ GTGGGCGCCATGCAGGCCTACACCGCGATCCG 56740 28 100.0 32 ............................ ACCGACTACATCGTGCCTGGCAGCGTGCGCTT 56800 28 100.0 32 ............................ ATGAGCGCTTATGTCTGCTACGGCTGCGGATC 56860 28 100.0 32 ............................ TCTGGTGCAGTCGGGGCATCCAACGTGCCTGC 56920 28 100.0 32 ............................ ACCGAAGGCCGCGTAATGCCGCGCTACGTGAT 56980 28 100.0 32 ............................ AGAACAGGAAAAGTCTCATCGGTGAGACTAAA 57040 28 100.0 32 ............................ TGATCTATCGAGGGCGCACCGCCATCGATCCG 57100 28 100.0 32 ............................ TCGGTGATGTCCGGGAACATCGCATTGGACTT 57160 28 100.0 32 ............................ AGCGCGATGCCGACGATGACCAGAGCAAGGGC 57220 28 100.0 32 ............................ AGCCAGCGCCCCAGCCTTCGGAACGCACACGC 57280 28 100.0 32 ............................ AGCGCGCCCGAGGTTGGGTTGTAGCTCTGGAC 57340 28 100.0 32 ............................ ATCAAGCCGCTGGTCGTGCACGCCAGCGAGAT 57400 28 100.0 32 ............................ TGTTGGCATTCGTGGGCTACGGCCTGCCGCCG 57460 28 100.0 32 ............................ ATCGACGTTCAGCTCGAGCCGGTCGATCTCGT 57520 28 100.0 32 ............................ TGCCACATGCGCTCGGGCGCGCCGGGGAAGTC 57580 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCTGCATTACCTGATGGGCCAGCCCTGGCTGCAAGGCATGCGCGACCATGTGCAATGCACGCAGCCAGCCCCGGTGCCGGACGACGCCGTGCCCTGCCTTGTGCAACGACGCCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGCCGCAAGGGCGAAAGCGCCGAGCAGGCCGCTGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCTTATGTGCAACTGCGCAGCGCCAGCACCGGGCAGCCGTTTTGTCTGTTCATCGAACACAAAGAAGGGCAGGCCTCCGCAGGGCAGGGGGGCTTCAACACCTATGGGCTGAGCCTGGGGGCCTCTGTCCCCTGGTTCTGACCCTTTTTCAGGCGGCCGGTGGGGTCGCCTTTCAAATCAACGACTTGGCGACGCCTCGGGATTTTGGGGTATTTGCGGGTTGGGGGTGAAAGTTCTTTGAAAATCAATGGATTGGGAGGATTTTTGTCTT # Right flank : AGGGATGGCTTCGGGGGAGGTGATGTTGCCCCCCGTATTCCCGACCCCGCCCTATTCGCAACAAAGCGCCTGGTCAGCCCCTGCAGCGTGTTGCCGCCTGAACTCCCGAGGCGACCGCATTTTCAGCGAAGAATGCGGATGCGCCTCGTTGAAGTGCTCGAAGGCCGCTGGCAGTTGCGGCAGTACCGTCCGCGCGTCACGCAGGTCCATGCGCGCCACATGGTCGCGCTTGAAGGTGTTGACGATGCTCTCGGCCATGCCGTTGCTCTGGGGGCAGCAGACGGGCGTGTTGTTGGCCTTCAGGCCTGGCGCGCGTGCCAGTGCCCTCGTTTCGGCGGCGGTGTAGGCACCGCCGCTATCGCTCAAGAATTGCAGCGCATGGGCAGCCGGGACTGCTTCGACCGAACCGAAGCGGTGTTCGACGGCCTCGATGAGCATCTCGCCGCGATAGACGCGTTTGGCATTGGCCCTCTGGGCGCCCGTGCCGTGCGCTGGCGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118836-118267 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZV01000083.1 Delftia sp. UME58 DE58_contig000083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118835 28 100.0 32 ............................ AGCCCAATAGCTGGCATCCGTGTACACCACAC 118775 28 100.0 33 ............................ CTGTACCGCCGCCCGTGCCACCACCCGTACCGC 118714 28 100.0 32 ............................ GAGCGCGGCTAGGTCCTGCAGCGTGACCTCGG 118654 28 100.0 32 ............................ TTCCTGCATTTCCTGGGTGATAGCTACGCCAT 118594 28 100.0 32 ............................ AGACTGCGGGGGACAGTTGCCAATCTTCCTGC 118534 28 100.0 32 ............................ AGATGCCGGCGGTCATGGCGCGCCCCCTGGCA 118474 28 100.0 32 ............................ AGCATGTCTTCCGTGTAGCCGGCCGCCTTCCA 118414 28 100.0 32 ............................ AGGAACGTGCCGACAGCCCGCAGGAAATTGAG 118354 28 96.4 32 ..................C......... GTTGAGGGCCGTGGGCGTCGCCCCCGCAAAGC 118294 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ATTCAGCATGAATGCTACAGCAAAGCCTCGCGCGCGCAAAGCTCCTGCAGCCGCGCGCCCCACCTTCGAACAAATCTCGGCCCTGGCACTGGACAAGGCCGAGGAAGACATCAAGCGACTTGTCAGCATCCGGTGCGCCGATGAGCACTGGCTTGATGCTGACCACGATGTGGACTATGCCGTGGAGCTTGCACTGTCCCACATCCGCGCCATGCGAACGACAGCCTTCAAGGACGGTGCCGAGTTCAGCCTGTCGTGGCTTAAGGCGGGCGCGGCCATCAACCTTGCCAGCCGGGCATTCAGCAGGACAGGCTGCGCCTACGAACGCTGCCTCAAGGATGCCGGCCGTATGTTCGCGCAGCTCGCTGAACTGGTGGAGTTCGTAGGCTGAGCACGCCAACCCTTTTTTTTCGATCCCTCGGGCGCTGCGAAAAAGGGTTCCAGCCGACTGAACCCAGATTTAGTCTTGCGCATCATGGACTTGTGCGTGATACGCTCTA # Right flank : ATCATCTGCTCGAACGCGGGGCGCGCAGCTGCGTTCGCTGCCGCGCAGGTAATTCCGGGGATCACCGGAATTGGCCCGCCTCGCCGCGACCTGCGCGAACCGGCTCAGCCACATGGCTGGGCACCTCCCTGCCCCACGCCCCGCCTGAGAACTCTCTCCCCGCCCTCCCGGGACAGAGGGCGGGGTGAGTCAGTGAAGATTGCCTGGATTGGCGCCGGCATCGCCGTTATAGCTGTCGTGGTCACCGCCTTGATAGCCATCCTCTCCTGAACTACAGCCCTTGGCGAGGATCTGAATCCCTCGGGATACATGGTCTTGCAACCATTCGAGGGTTTCGCCGCGTGCGACCTGTTGCCGCTCCGACTCTTTGGCTGAAGCTTCAGCAAGCTCTACAGCGCGCCGTGCGGCAGCCGCAGCCCGAAGCGCCGCGAAAGCGGCGGCGAAGACCAAGCCCAGCGCCACGACCAACGCGCCAGCAAGAATGAGGGTATGAGGATGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //