Array 1 56164-56394 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJQZ01000007.1 Bacillus safensis strain 19-2 19-2_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 56164 32 90.6 35 ...........T.T.......T.......... CATTCAATGGTCTATATTCTGTTTCAAGGTTTGCT 56231 32 93.8 32 .............G.......T.......... TTCCATCTGCAACCGTTGTTTATATCCATCAA TGA [56244] 56298 32 100.0 33 ................................ TTCGGTTTGTAACTATATTTCGCACCTCTTACA 56363 32 90.6 0 .......................AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 34 GTCGCACTCTACAAGAGTGCGCGGATTGAAAT # Left flank : GTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTTTGTTAATTACCTCTTGATTTCTCACTCTAGGTCGCACTCTACATGAGTGTGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAAATCTGTCTCGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACATAAATGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAAACGCA # Right flank : TGATTGTCTCTTAAACGGGTATAGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAATTAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATGATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGT # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACAAGAGTGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 64037-64397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJQZ01000007.1 Bacillus safensis strain 19-2 19-2_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 64037 32 100.0 33 ................................ TTATTAGTTATTGTTGTTTTTTTTTTGACTCCA 64102 32 100.0 36 ................................ AAATAATGCCGCAATATTTTTGGGCAGTCAAAACAG 64170 32 100.0 33 ................................ ATATATGTAGAGCATTTCATAACCATACTCAAT 64235 32 96.9 35 ...........T.................... GTATCGTTCCAGCCAGTATCCTATCGAAAGTAAGG 64302 32 90.6 32 ...........T............G..T.... TAGCCGATGGTTCAGCTTGATGTTTTTTTCAA 64366 32 81.2 0 A..........T.......T.A...A.A.... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 94.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGACAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGATAACAAAAAAGAATCTACCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGACATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTTAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTTTCACCCATTTTATTAATGAATTCAAAGCGGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTATGATCACCAGTTAAACTATTAGAAGCTCCTGGTCGCACTCTACATGAGTGCGTGGATTGAAATACTCCGCCGAACAGATAAGACTTCGCTAAATCCGTCGCACTCTACATGAGTGCGTGG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 64743-64970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJQZ01000007.1 Bacillus safensis strain 19-2 19-2_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 64743 32 100.0 33 ................................ TATGATCACCAGTTAAACTATTAGAAGCTCCTG 64808 32 100.0 33 ................................ ACTCCGCCGAACAGATAAGACTTCGCTAAATCC 64873 32 100.0 33 ................................ TTCTAGGAAATCATAGCCACTAGGTATTAAAGG 64938 32 87.5 0 ...................GAC.....A.... | T [64967] ========== ====== ====== ====== ================================ ================================= ================== 4 32 96.9 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTATATGAGTGCGTGGATTGAAATGTATCGTTCCAGCCAGTATCCTATCGAAAGTAAGGGTCGCACTCTATATGAGTGCGTGGGTTTAAATTAGCCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTTTCACCCATTTTATTAATGAATTCAAAGCGGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGGGTGCGTGGATTGAAATATCAAGATTCACTCCTGTTGCTCTAATATCAAGGTGTCGCACTCTACATGGGTGCGTGGATTGAAATACGTTTTGCCAAGATGACATTGCCCTCTATAACGTCGCACTCTACATGGGTGCGTGGATTGAAATCCGTCACCGCTCGAAATGTCTAAGACTAGATCACGTCGCACTCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 65262-65557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJQZ01000007.1 Bacillus safensis strain 19-2 19-2_R1_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 65262 32 100.0 35 ................................ ATCAAGATTCACTCCTGTTGCTCTAATATCAAGGT 65329 32 100.0 33 ................................ ACGTTTTGCCAAGATGACATTGCCCTCTATAAC 65394 32 100.0 34 ................................ CCGTCACCGCTCGAAATGTCTAAGACTAGATCAC 65460 32 96.9 34 ...............A................ TGCTAATTAAAAAAGCAGTGGAAACGAAAAAAAC 65526 32 78.1 0 ...............A....A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 34 GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Left flank : CGTGGATTGAAATTATGATCACCAGTTAAACTATTAGAAGCTCCTGGTCGCACTCTACATGAGTGCGTGGATTGAAATACTCCGCCGAACAGATAAGACTTCGCTAAATCCGTCGCACTCTACATGAGTGCGTGGATTGAAATTTCTAGGAAATCATAGCCACTAGGTATTAAAGGGTCGCACTCTACATGAGTGGACGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAATGACCTTTGCTTCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGATAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACAGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGCCTGAACTTCATTGTAGGCGAAATAATAATCTCTTCAATTTCATC # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //