Array 1 5120-6167 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOS01000063.1 Cronobacter sakazakii strain MOD1_LR753 LR753_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5120 28 96.4 32 .................T.......... TTAAGCAGTCATCTCGCAAGGCTCGCGGAAGA 5180 28 100.0 32 ............................ ACGTGGCTTCAGAACAGCCAGGACAGGCCGAA 5240 28 100.0 32 ............................ ATGCCGGGAAGCGTGCCATTCGCGCGTTGTGG 5300 28 100.0 32 ............................ TCCAATCGCGGCCAGACCAACGGCGGCACCGG 5360 28 100.0 32 ............................ GCGCCAGTTTTGTTCGCACTGCCTGCGCTGTC 5420 28 100.0 32 ............................ AATACGCTGTCAGGGAGGCCGATAAGGGCAAT 5480 28 100.0 32 ............................ GACGTGGCCGCCTCCGCTGCGGTTGAATACGA 5540 28 100.0 32 ............................ AGAGTATCTACCCAACTATCCTGGCACTGTTC 5600 28 100.0 32 ............................ AGAGAACGCCGAGACGTCAAGGCCGCTGTTTT 5660 28 100.0 32 ............................ AACGTGCGCACTCGACGTCGCCCTCCGTTCCC 5720 28 100.0 32 ............................ GCGGAGACAACGTTTTTTACAGCGTGCTGGAG 5780 28 100.0 32 ............................ TGTTCGTGATAAGTGACAAGCCGACGGAAATT 5840 28 100.0 32 ............................ AGCGCCAAAGGCCGCGCCGCCATGCTCGCAAC 5900 28 100.0 33 ............................ GGAAACGATGGCCGAAAATTTCCCAATGTTTCA 5961 28 100.0 32 ............................ ATCGCCACGGAAGGCGAAAACTCCTCGCTTCC 6021 28 100.0 32 ............................ CACCAGAGATTAGAGAACGGTTTTGATTCGCC 6081 28 100.0 32 ............................ TCCACGCTGCCAGCCCGCAACCGATACACAGG 6141 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCTCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAAGATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTTGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGACATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43315-42920 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOS01000002.1 Cronobacter sakazakii strain MOD1_LR753 LR753_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43314 29 100.0 32 ............................. TGATCAACATCTCCGGCGTGGCGTTAATAATC 43253 29 100.0 32 ............................. TGCAGGCCACTGGATCACAGCCTTGAAACGGG 43192 29 100.0 32 ............................. CTCGCGCTGGGCGAGGCTGTGCAGGTCGTGGG 43131 29 100.0 32 ............................. CAGAGGGAATTGTTGCCGTACGCGCAGAACGC 43070 29 100.0 32 ............................. CCGTCACCCTTAGCTCCAAAATCTTTGACGCT 43009 29 100.0 32 ............................. AACATAGAGAACGCGGCACAGAAGAGTTTCCG 42948 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69382-68255 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOS01000002.1 Cronobacter sakazakii strain MOD1_LR753 LR753_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69381 29 100.0 32 ............................. ATAACTGGGGGACGCAATGAGCACCGCCAAAA 69320 29 96.6 32 ............................C CTATTATATACACACTAAATTACGCGTCTAGT 69259 29 100.0 32 ............................. GCGCAGATTGAGGCAGGCATGCGCCATGCCAG 69198 29 100.0 32 ............................. GCGTCTTTCTTACGGTCAGTCTTGATACCGCG 69137 29 100.0 32 ............................. AAAATTGTTTGGCTGTTTTTTGTCATACAGGT 69076 29 100.0 32 ............................. CGCTCTCACCGTTTGCGTTTAACGACCAGACT 69015 29 100.0 32 ............................. GCGTTAAAAGCATCAATGTGCCTGAAACTGGC 68954 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 68893 29 100.0 32 ............................. TGTAACCGCAGTATTAACTCAACTGGCGCGCA 68832 29 100.0 32 ............................. ATCATGTATTCGGCGTTAATGCTGGTTCCTTC 68771 29 100.0 32 ............................. GGTATCCAGCCGAGCGTGCAGCAGACGGCGGA 68710 29 100.0 32 ............................. CCACAATTCCCAGCAGGCTCGGAACGAAGGGT 68649 29 96.6 32 ..................A.......... TACCGCCGTAACGCCGTGGCGCGTGCGGCAAT 68588 29 100.0 32 ............................. TACAGCCAGACTCATAACATGCTCGTCATCGC 68527 29 100.0 32 ............................. TTTTTCTGCTATATCGCGCTGCTGATCGTTAG 68466 29 100.0 32 ............................. ATTCAACACAATCCGCCCCATCCGGGGCAAAT 68405 29 100.0 32 ............................. ATTATTGGGAGACTCCTGCACTTATTACTGCA 68344 29 96.6 32 .....T....................... CGCCTCAAAATTGGCGTGGGCCTTTTGCTGGT 68283 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACTAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGATGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACCATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACATCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //