Array 1 62814-62663 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYJ01000024.1 Escherichia coli strain HH17CH NODE_24_length_62813_cov_184.233407, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62813 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62752 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62691 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14150-15156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYJ01000026.1 Escherichia coli strain HH17CH NODE_26_length_57223_cov_196.904508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14150 29 100.0 32 ............................. CAATCACCTCTGTGAATTGATGGTAGCAGACA 14211 29 100.0 32 ............................. GCCACCATGAAGGGACTGGAACTTCTGGCCGA 14272 29 100.0 32 ............................. AGGCCGAAGAAGAACGGCAGCGCGCGCACCAG 14333 29 100.0 32 ............................. CGAAATTGAAAGCTATTTCGGAAGCGCATCTG 14394 29 100.0 32 ............................. GAGTGGTTCACAGTTATTAAATCTGATTTGTA 14455 29 100.0 32 ............................. TCCGGATGGTCAGTGGCGCTATGTGGTTACGC 14516 29 100.0 33 ............................. GAAACTGAACAAAGATGTCCCTGTCAATAATGC 14578 29 100.0 32 ............................. CCAATACAAACATGTCATTAGTCTGTTCATAC 14639 29 100.0 32 ............................. AAAACGGGATGGTGATACGCAGCCGTAAAGAG 14700 29 100.0 32 ............................. ACGTACTGGTATTCCGTAGACTGGGTGCAGAT 14761 29 96.6 32 ............................C AAATTATTTTTGCAATCATGTTGCAATCATGA 14822 29 100.0 32 ............................. GACGTGATATCCAGTAACGAGACGTCAGTCAC 14883 29 100.0 32 ............................. GTGATTTACTGCGTAATAATCTAGGATTAATG 14944 29 96.6 32 ...............T............. AAAACAAGCAGCTTATGCTTTACGCTCTCGGT 15005 29 96.6 33 ............................T GTATGGCACGCGAACGTTTTACTGAAAATCTGC 15067 29 100.0 32 ............................. TTGAACGACGCACAAAAAGAAAAAGCCATTGA 15128 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACGACCCGCGCCAGATATGTTACCGCCAGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGAGAAAACAGACGTATTCCGGTAGATTTGGATGGGTTACGCTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : TAAGCGTCGTCTGAGTACCGTCTGGTCCCGAATCCAGGATCCTGTAACTTGCAAAATGGCATCTGAATCGATCGCAGTTTGGGCCAATCCGTGATCGAATAGAGAGGAATACGCAGCTCTTCTCTCCCAACCTTCGAACTACCATCCTGCTCACCTCCCGCTACCTGCCACATAAAATGTCGGGGAGGAGAAATAACACTGACTCATCCCTCTGCTGAACTCATGAGCACTGTCCTGCGCGAACTGATGCGGGGGCCTGTATGATAAATCTTCCCGCAGGCACAAAAATCTGGCTGGTTGCCGGTATCACCGTAAGCGTACAGCCTGAACCGTCTGGTCAGAATCTGACAAATTAGACAAAGTGGTGTCCACCAAATAAGTAGTGGGAACCAAAGTGTCAGATATGCAGAAAAATGTGACTCCCGGCAGGCGAAAAGGCTGCCCTAATTATCCTCCCGAATTTAAACAGCAGCTCGTTGCTGCCTCCTGTGAACCCGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56-206 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYJ01000514.1 Escherichia coli strain HH17CH NODE_516_length_229_cov_0.973684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56 29 100.0 32 ............................. TTCACTATCAGTCAGCCGCAGGAAATTAAACT 117 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 178 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAG # Right flank : ACTGGTTCTGTAACCCAAATTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 689-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYJ01000005.1 Escherichia coli strain HH17CH NODE_5_length_218966_cov_193.508541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 688 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 627 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 566 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 505 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 444 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 383 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 322 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 261 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 200 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 138 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17515-16205 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYJ01000005.1 Escherichia coli strain HH17CH NODE_5_length_218966_cov_193.508541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17514 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 17453 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 17392 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 17331 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 17270 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 17209 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 17148 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 17087 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 17026 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 16965 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 16904 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 16843 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 16782 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 16721 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 16660 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 16599 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 16538 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 16477 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 16416 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 16355 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 16294 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 16233 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //