Array 1 177802-176980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDB01000007.1 Escherichia coli strain 44-H78-B entry7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177801 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 177740 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 177679 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 177618 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 177557 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 177496 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 177435 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 177374 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 177313 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 177252 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 177191 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 177130 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 177069 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 177008 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 207269-205715 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDB01000007.1 Escherichia coli strain 44-H78-B entry7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207268 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 207207 29 100.0 32 ............................. TTTTCGGGGCCATAAATGGCGCTCATTTATGT 207146 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 207085 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 207024 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 206963 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 206902 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 206841 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 206780 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 206719 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 206658 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 206597 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 206536 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 206475 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 206414 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 206353 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 206292 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 206231 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 206170 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 206109 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 206048 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 205987 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 205926 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 205865 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 205804 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 205743 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //