Array 1 272-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBL01000041.1 Cronobacter sakazakii strain 558 contig078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 271 34 97.1 44 ...................T.............. ACAGGTAATANNNNNNNNNNNNNNNNNTCCGGGTGGGTGTCTTG 193 34 100.0 35 .................................. ACGTGTAACATCGCGTCTTCCAAGTGGGTGTCTTG 124 34 100.0 35 .................................. GGGGGTAACATCCCTTCTTCCGGGTGGGTGTTTTG 55 34 97.1 0 ......T........................... | ========== ====== ====== ====== ================================== ============================================ ================== 4 34 98.6 38 TTTTAACGGCGGGTGCGCTGCGCTTACCCGCCCT # Left flank : TACGCGGCGATGATGGCCGATACCATTGCGCGTTATAAAGAAGGCAAACCGGTGCTCTATTACACCTGGACGCCGTACTGGGTGAGCGACGTGCTGAAGCCGGGTAAAGATGTGGTGTGGCTGCAGGTGCCATTTTCGTCCCTGCCGGGCGAGCAGAAGGATATCGATACTAAACTTTCAAACGGCAATAACTTCGGCTTCCCGGTGAATACGATGCACATTGTGGCGAATAAAGCCTGGGCGGAGAAGAACCCGGCGGCGGCGAAGCTGTTCGCGGTAATGAAGTTGCCGATTACCGATATCAACGCCCAGAACGCGATGATGCACAGCGGCAGAGCGAGCGAGGCGGATATCGAAAGCCATGTGGATGGCTGGATTAAAGCGCACCAGCAGCAGTTCGACGGCTGGATCAAGGAAGCGCTGGCCGCGAAGAAGTAAGCGCTTTGCGATGAGAGATAACACCCGCCACCCGGCGGGTGTTTTTTTAATGGCGGGTGTAT # Right flank : TATAAATGGAATCGCTGCTTTA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAACGGCGGGTGCGCTGCGCTTACCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 90808-92188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBL01000056.1 Cronobacter sakazakii strain 558 contig143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 90808 29 100.0 32 ............................. CATACGAACGCCGGCGTCACCGTTGGCGAATC 90869 29 100.0 32 ............................. AGTGCGCCCACGTCGCGTTTTACATTTGCGAC 90930 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 90991 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 91052 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 91113 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 91174 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 91235 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 91296 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 91357 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 91418 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 91479 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 91540 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 91601 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 91662 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 91723 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 91784 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 91845 29 89.7 43 ..........................NNN NNNNNNNNNNNNNNNCACTTCGCGCCGCGGCGGTATTTTTTGC 91917 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 91978 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 92039 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 92100 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 92161 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= =========================================== ================== 23 29 98.1 33 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118588-119043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNBL01000056.1 Cronobacter sakazakii strain 558 contig143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118588 29 93.1 32 ...........A.............G... CAGGAGGGCGGGAATATTTTCCAGACCGGCGC 118649 29 93.1 32 ...........A.............G... TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 118710 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 118771 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 118832 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 118893 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 118954 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 119015 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //