Array 1 352-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLR01000036.1 Caldibacillus thermoamylovorans strain B4064 NODE_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 351 30 100.0 35 .............................. GCGGATCTAGTGAATGAAAGGTTTGGACTATCCAT 286 30 100.0 37 .............................. AATATGCGGCAGGTCCGGCGGCACAACTCGGGTATTC 219 30 100.0 36 .............................. ATGGCACTTGGCTCGATCATGACGCGCGAGCCGAGC 153 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TTCTCGGTTTTGTTGACTCTTCTGTCCTATTGGTGGTAATGATTGCTGGTTCACCTAATAATTTACCCTATTATTTGAAAGTTTTTATTGGATGTCAGGATGATAGAAGCCTTTTGCATTCATCAGGTGAAAAAAGTTGGATCTCCTGTTGCCCCATCAATAATGACGAGATTAGTATTTGGGATTTTTTTAAAACGTGTATAGAATTTACGAGATATTTCTCTGTTTTTGCGGAATGGACCAGTTCTTTCATTGAGAAAAACATCACGTTGTATTCTTGACAAAATGTAATTGGACTAGTGGAAAATTTTTGTCGTCGACCTCCAGTAGTGTACAAACCCCGGGGGATCGACGACAAGTTATTTTGATAAAAAAATCAATAGAAAATGCTTAGATTACGAGTATTTATGAAAATATAATTGCTAGAAAGCCAAATTTTTATTATAATTAACACAAAACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : CAAATCAAAATCAATCTTTTTTAGTTGCATGATAAACGTTTATATCTTACCGCTAAATTGTAAAGTCAAATGCATAAAATTTTTTTAAAATCTTGTTAGATTACGGTTGCCTGTAAAAAGCTAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 74-1769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLR01000159.1 Caldibacillus thermoamylovorans strain B4064 NODE_601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 74 30 96.7 37 C............................. TTTATTCTTGACGACCTAGAGTCGAAGGATTCGACGA 141 30 100.0 36 .............................. CGGTAACTCGTGGATTTGACGCAACAACTCCGGAAG 207 30 100.0 39 .............................. TCTGGCTTCGTGCAGTCTAAGACATAGACACCTTCAGCC 276 30 100.0 37 .............................. CACCAACATTCAATGTGCAGCACGATAAGACTTCTTG 343 30 100.0 37 .............................. AAAGGCACAACGAACGTTTTCCAACGCTACCGATTTA 410 30 100.0 37 .............................. CGGATGATAGCGGTAATCATGTAGACGTCGTAGCCGC 477 30 100.0 37 .............................. GCAGCGCAGCGGGAACAGGAATTGCAAGCAGTCAAAA 544 30 100.0 36 .............................. TCATCGGCGACCATTTATCTCCGATTATTCAACGGT 610 30 100.0 37 .............................. ACGGAAACCAAAATATGGGATGTCATTTAGAATTGAC 677 30 100.0 35 .............................. CCTGATGAAAGGGTAAGTAAGTGTTTGCGGCTATG 742 30 100.0 36 .............................. CGGATTTAAATCCGGGAATCTGTGAATGCCCATATT 808 30 100.0 37 .............................. AAGGTACTCTATTATTTATTTATTTAATTTTAAATCA 875 30 100.0 36 .............................. CCGGTAAAATATCCCGTTTCGAAAGCATCGTTAACC 941 30 100.0 37 .............................. TAACGTACTGACCGAATACGCTGACTGCCGGTAGGGA 1008 30 100.0 37 .............................. CTCTTAGCCAACGTCAATACTTTTGTTACGGTTACAC 1075 30 100.0 34 .............................. TTATAACGGAATACCGTTGTGTTGGCAATATTTT 1139 30 100.0 37 .............................. ATCGCTCGCGAGACTAAAAAAGCCCAAGAGAAATTAT 1206 30 100.0 36 .............................. TATAACATCTGAACTGGACGGAAAAACCGTTTCTAA 1272 30 100.0 37 .............................. CTTCTTCCTCATCCTCTTTGAAATTGATGATATCTTG 1339 30 100.0 36 .............................. TTTGCACATTCATTCGTTTTCACCTCCTTCATTTTT 1405 30 100.0 36 .............................. TTGATTTTGTATAATTCGTCGAAAGCGTAGTCCCGC 1471 30 96.7 39 ................C............. GCTCTTACAAGAGCAATACCGGACAAAAATGGTGAAAAG 1540 30 100.0 36 .............................. TAAAGGGAGCAGATGGGATACCGGGTGAAAAAGGAC 1606 30 100.0 35 .............................. ACAATATCGCCGCTACCTAGTAGAATGTCTTTTGC 1671 30 100.0 38 .............................. TTACGAAGAGTCCGCCAAAGACCGTCGTTGACCATTTC 1739 30 80.0 0 ...............T...AT....C.CT. | T [1757] ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.0 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : CGTTGCTTTTAAGTATACCGTATCTACATGACTTTTTTTATATTTTCTTTATGCATTTCATTTTACAACTAACC # Right flank : CTCTGTCATTTTCAAACTACCACCTTGTCAATTTTATTGGTCGTATCATTGTTGATCGTTTTTTCCCATTTTAAACTGAGATGAATCATTAGAATTTGATAGCGTTTATTTGTATCGTTTTATATAAAGCAAGGAGATGTTTTAATATGACAACAATCGCATTTGATCTTGATGATACATTGTATGACAGAACGCAACCTTTAAGACAAGCCCTTTTAGAAATTGATGAAGCGAAATCTCTCCCTTTTCATAAATTTCTTAACGTTTTTCAACAAAATAGTGATATTGCCTTTGAAAAAGTGAAAGATCATATTTGGACACTAGAAGAATCACACATTTTCAGAATTAGAAATACGCTTCATCAACTGGGAATTGATATAAGCTTAAGTAAGGCACAAAATTTCCAAGACCAATATAAAAAAAATCAACAACAAATTGAGCCCTTTCCATGTATCTTAGAAATTTTAGACTTTCTTCAGACAAAAAATATACAAACGATA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 22251-22410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLR01000002.1 Caldibacillus thermoamylovorans strain B4064 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 22251 30 100.0 35 .............................. TGACAGCATTTTGGTCTGGTAATTTAATTTACAAA 22316 30 100.0 35 .............................. TCAATTGTTTGAATGCTAGTTTCAATTCTTTTTGT 22381 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : ATATGTTTCGCTCAAAGCAGTATACAAGTAGACAAGAAATGGGTTTAAAAAAAGGTGGAGAAGAGTTTTTACTATAAACGATTCATTAATTAATAGTTGATTTCAGCATTTCTTTTCAAAAAAATTTTCTATGTAAACATGTTTTAATAAAAGTAAGTTGGTTGATCATTAAAATTTTAAAAGAAGGATGAGTATCTTAAATTTAGGCGGAAAGAACTAAGTTTAAGCAAAGATATAAATTAAGTTCAACGGTGGAAGGAAAGGAGAAAAATACATTGTGGAGATAGGTTAATAATTTTTCTCTGACTTTTTGTCGTCGACCCTCAGTAGTGCATGAACCCCGGGAGGTCGACGACAGTTATTTTGTAAAATGATAATTGGAAAAATGCTTAAGCTATCTGAGATTGGGAAAATCTAATTGCTTAAAAATAAATTTTCCATTATAATTAACGCAAAAGCAACAATACATAGAGACCCTATTATATCAAGGCTTTTTTGTG # Right flank : CTGCCAACGGTGTAGATGGAGTAGCTGATTTCAGGAAATAAGTCAGTATAGGATAAGTATAGCCATTATTATGTTGCTTTTGTTTTAATTCAACTATTAAAAAAGAGCTACATTAATAACAATTAATCATGGCTAGAGGACAAAATGATATAGCAGGTTATTATATTTTCCACAGAAAAGACACGGTTACCATGAAATTTAAAAAACTATTGTAAACGTGAAGGATTTTTTTCGGTTTTTGTCGAATAATAGAGTAAAATGACAGTTTTAATCTAGCAATCATAACTTTTTCCATCTTTAACAGAATAGGAACTTGTTTTTGCTGCTGCAGATACAAGACTTTCCCTTCAAGATTCGAATCAACGAAAGGAAAAGATGGGATGTGGACTGCCTACATGCGTTCAATTGGTTCGGATGGGCATTGTTTGTCGCAAAAGTGTTGCCAGATGAATATGGCTTTTAGAATTGTTTTCTTTCTATATCAGTGGGAAAGAAGATCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12167-10153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLR01000026.1 Caldibacillus thermoamylovorans strain B4064 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12166 32 100.0 34 ................................ CCAACAAGTTGGGAAAGATTCGGCGGCTCATAAT 12100 32 100.0 36 ................................ TCTTTTTTATCGAAATTATTGATATACATGATTTTA 12032 32 100.0 35 ................................ TAATTTCTCGGCGAGTGCAGACTATTGTGAAGCAA 11965 32 100.0 35 ................................ CAAATACTCATCACCCGGCATAATCTCATTCCCAA 11898 32 96.9 35 ...................T............ AAATAAATGGTTTAATCCACATATGGATCAATTTA 11831 32 100.0 35 ................................ TTCTGCGCTAAGTATTTTATATAAAAGATATAGGG 11764 32 100.0 35 ................................ CAGGTCACTTTTAAAAATGTAAACGATCCTTTGCA 11697 32 100.0 34 ................................ GGACCTTGCACGCCCTGCGGTCCTTGGATAAGCG 11631 32 100.0 35 ................................ ACCCGGTATCCCATCCGCGCCCTTTATAAGCGACC 11564 32 100.0 33 ................................ ATAATAGCGTGTACTCTTTGAAAAGCAACATCA 11499 32 100.0 33 ................................ TTGTACACTGTTTGCAGTCGTAAGTGCTTTTGC 11434 32 100.0 33 ................................ AACAGGAACATTTACATTTGATGGTCAATCCAT 11369 32 100.0 33 ................................ TACCTAGCCTAAACTCACGATGGAAAGAATCAA 11304 32 100.0 34 ................................ CACGATAAGTGAAAATAAACGTTACAAACAGGCT 11238 32 100.0 34 ................................ ACAGAGTTCTAAGTGAGTCACTTAATACGGTATC 11172 32 100.0 34 ................................ CTTGGGGGTCCCCTGCGTACCGCACCGGACGACC 11106 32 100.0 33 ................................ CGGCAGACATGCCCTTGAACAACTAGCGTCTTT 11041 32 100.0 33 ................................ AAACAGTGATTTACATGACATTACTAAGTTTAT 10976 32 100.0 33 ................................ ACCAGCAATAACAAAATAATCGGCGCCTTTTTC 10911 32 100.0 33 ................................ GAGCAGCAATCATGACTGGCGGCTTCATCTCGT 10846 32 100.0 33 ................................ ATACCAAACTGCAATAATGTTGCCAATATCGTT 10781 32 100.0 34 ................................ GTCAAGCGGATGCATTGGCAACCGAAAAATTAGA 10715 32 100.0 35 ................................ AAAAGGATAACTCAATCTACTCCCACCTTCCTGCT 10648 32 100.0 33 ................................ TGTGAACCAATTGAATGGGTGATAACCCATTAC 10583 32 100.0 34 ................................ ATTTAAATCGTTTGTTTTTTGTGTAAATGTCAAT 10517 32 100.0 36 ................................ CACATACATGATGAAGTTGTGCTAGACGTACCAAAA 10449 32 100.0 34 ................................ AGATTGAAATAATCTCATTGAATCAGTCGAAAAT 10383 32 100.0 34 ................................ ATTTAAATCGTTTGTTTTTTGTGTAAATGTCAAT 10317 32 100.0 36 ................................ CACATACATGATGAAGTTGTGCTAGACGTACCAAAA 10249 32 100.0 33 ................................ GGCCATCCGCGCTGTTTGCATATGCAAGGTGCG 10184 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.8 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACGTTCTGATTTAGATGAATATCCGCCATTTTTCTGGAAGTAGGTGAGAGATTGCTCGTATTAATAACATATGATGTTAATACGGTTAGTACTTCAGGACAAAAGAGATTACGGAGAGTTTCAAAAATATGTCAAAATTATGGACAACGTGTACAAAATTCAGTTTTCGAATGTGTAGTTGACGCTACTCAATATACTACATTAAAATTTGAACTTGAGAGTGTTATAGATAAAGAAAAAGATAGTCTTCGATTTTATAAATTGGGAAATAATTATAAAAATAAAGTTGAACATATCGGAATAAAACCTTCAATTGATATGGAGGGAACATTAATTGTTTAGTGCGAATGTAAAGTACACATAATTTTCCTAAGGGTTTCGCACCAAATTTTTTACTATTTTTTTCCATTTATTTGCTCATTTACTTAAATGTTCTTTAGTTAACTAAAGAAAATAGCGGTTTTTCTGTATATTTTGGGTCAATTTGGCACAAAATCGCT # Right flank : CGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGTTTGGAGGCTTGTTGTTCTTGCTTATTGGTACATGGGTATTCAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTGGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATCAGGTCGCTATTTGGTATGAAGAAGTCCTTGAATCGTACCCGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //