Array 1 1110-573 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKHA01000033.1 Staphylococcus epidermidis NIHLM008 HMPREF9977_contig00064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1109 36 100.0 34 .................................... TTTTCTTCTAATACATTGATGTCTGAAATAGATT 1039 36 97.2 35 ...........................A........ AAGTTGAATGGATTACCTTTGTTATATTTACCTAA 968 36 97.2 35 ....A............................... AGTATTTAAAGAATCACTTTAAACAGTGGACATCT 897 36 94.4 37 .........G.......C.................. ACAACATATCTAGGGTTCCCGTTGTTGTCGTTGTCGA 824 36 88.9 38 .........T.......CCG................ ACAAATTCAAATTCCTCAGGTGCTTCAAATTCAAATGG 750 36 97.2 34 .................C.................. GCGAAATCAAATAACATTTGCTGAATATGTTCAA C [738] 679 36 88.9 35 ..........T.G......A.......A........ AAGTTGAATGGATTACCTTTGTTATATTTATCTAA 608 36 88.9 0 ....A............C...............T.T | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 94.1 36 ATTCGATAACCACCCCGAATAAAAGGGGACGAGAAC # Left flank : TGTACGTCTTAATATTCAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTATTCCTGATGTTAAACGTTTTTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGACAAAGAAACATTAGATTTTTTAATGAAAAATGTTAATATTGTCGACTACAAATTGAAAAGTACACGTTTTAACTTAGAAAAAGTTAAAATTCCTTCGTTTACAGGAGAAATGGTGTTTAAAATTAAAGGCCCCTTACCTTTTTTACAGTTAACTCATTTTTTATTAAAGTTTGGCGAATTTTCAGGTTCAGGTATGAAAACAAGCTTAGGTATGGGAAAATATAGTATAATTTAATTAAGACATAGTTAAAATTTAGTTGTCAAAAAATATGACATTTAGCGTCTATAGTACAGGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTCGAACTATTGATATGATTGGCTTTAAAGAACTAT # Right flank : TTTTAGCGTAGTAGCAAATATTAAAAAATATATTTGATTTGATAAACTATCATACGTATCTCAATATTATCAGGTATTCCTAGTTCTCAAGACATGAGTTTAGGAAGATGAGTATTTTTAAGATTTTGTAATTTTTTATTAAATATGTTTCTGGAAAGATTATTTTCATAGTGTTAAGTACAGATTTGTAATCAAGATTTTTATACCAGATGTACCATTTTTATAAATGATATTGTTTAGAATAATAAAGTTACTTTATTTGAAGTATTTGGAAGATGTGTAGGTAAATTGTTTAAATAATAACTTTTAGATATTTCATTGGGTAATATCGAAATATTGTAATAAGTATTAAATTACTTTTCGAAACATAAGGTAATATATAAAGATTATAAAAATTTCACATGGGGGCTGTGTTGGCTGTTAGTTTATTTTACGTGAAAGATATCCTCAATTTTAGATAAGGTGTAAAGAACGGGGATTAAATAGATTATCAAAAATTG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACCACCCCGAATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 10080-9829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKHA01000033.1 Staphylococcus epidermidis NIHLM008 HMPREF9977_contig00064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 10079 36 100.0 37 .................................... CAATTCACTTAAATAATCTAATTTCCACTCAATTAAT 10006 36 91.7 34 ........A.TC........................ CGTCCTTCTCCGTCGTTAGTGTAATAGTTTGTCA 9936 36 91.7 36 ...T....C........G.................. TCATCTCCAAATCCATATGCTTCACAATTATCAATG 9864 36 77.8 0 ........C........G............AGAGTG | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 90.3 36 GATCGATAGCCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : TTGCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTAAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTGCGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGCCCAATTTAGTTTTTACATTTCATACTTGCACATTAGCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGAAAACGTCTAATTTTTATTCGAAACATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATGCTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCG # Right flank : TAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAGAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTATAAATAAAATTTTTAACCAAACACAATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGTTT # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAGCCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //