Array 1 21844-19190 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYE01000038.1 Pseudomonas mendocina strain EF27 EF27-38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21843 29 100.0 32 ............................. GACGGCCACGTATTCGCCGAGATGGACAAGCG 21782 29 100.0 32 ............................. GCCACGCGGCCCTACTGGATGTACGAGCACAG 21721 29 100.0 32 ............................. CCCAGCCACCGCGCTGGGCTTTTTCGTTTCCG 21660 29 100.0 33 ............................. GTCTTGTTCTTGATGCTGTAGTCATGCAGCGCC 21598 29 100.0 32 ............................. TCATGGCACTCAGCAAAGACCGCAACACCAAA 21537 29 100.0 32 ............................. CTGCTGGAGGCCGTGCATGCCATCCAGACCGA 21476 29 100.0 32 ............................. AACAAGAGCTTCGAGAACACCGTGGGCGTGCC 21415 29 100.0 32 ............................. CGGGTGGTAGCGCCCAGCCAGCCGTAGGTTTC 21354 29 100.0 32 ............................. TCGCTCAGCCCGCGCTACCTGCAGACCAAATC 21293 29 100.0 32 ............................. ACAAAACGCCTCCCTCTCGCCGTTGCACTCGC 21232 29 100.0 32 ............................. GGCGAGCTGGAGGCCTTCAACCTGCAGATCGC 21171 29 100.0 32 ............................. TGGTCAAGGCCGAGCGCAACGCGGCCGGCGCC 21110 29 100.0 32 ............................. GATCTCGACAGCCAGATCACTGCCGCCCTGGA 21049 29 100.0 32 ............................. TTCAGCCTCGGCGCGCTGGACCCCATCCAGAA 20988 29 100.0 32 ............................. ACTTCACCACTGCACTGAAAGACAAGCTGGCC 20927 29 100.0 32 ............................. CAGCTGCTCGACCACCTGGCGCAGGTCAATGA 20866 29 100.0 32 ............................. GCATTGATTCTCCTACTGGTTTTGGTTATCTC 20805 29 100.0 32 ............................. CCCTCCAGTTCGGCTTGGCTCAGGTTGGTGAA 20744 29 100.0 32 ............................. GTTTACGGCCTGGGCACCGACAAGGAAGCGGC 20683 29 100.0 32 ............................. TCCTGTCCACTGGTACGGTACAGGGGTTGAAC 20622 29 100.0 32 ............................. CACCTGTTGCACCACGCACGCACCATAAGCAA 20561 29 100.0 32 ............................. ACGCCGGTGGTCTTGATCTCGACCTCTTCGCC 20500 29 100.0 32 ............................. GCGTCTGCCATGCTCCACTCGTCACGCCAGGC 20439 29 100.0 32 ............................. CGATGCTCCAGAACCTGAAGGACTACGACAAC 20378 29 100.0 32 ............................. GTGATGTGTTCGGTGTTCATGGCCGGATCAGT 20317 29 100.0 32 ............................. GGGAGGGCGCCGCCATGCTTCGCTATCTCTTG 20256 29 100.0 32 ............................. TTTTTCATATCGGGTTCCTCGAATCAGGAGAG 20195 29 100.0 32 ............................. GCTGGTGACCTTGGCCGGCTGCTGCTCAGGCT 20134 29 100.0 32 ............................. CCGTGGATGCTGTGTTCTGCATGCGACCCGGA 20073 29 100.0 32 ............................. CGAACGAACTCGCCCAACTCAATCTTGAAATC 20012 29 96.6 32 ..A.......................... TTTGTTACTCGCGCTGTACCGGCTGGGCCGGG 19951 29 100.0 32 ............................. CAACTGATCGGCATGGCCTTGGGCAGCTCGCC 19890 29 100.0 32 ............................. GAAATCCGCTCCGCTTTTCTGGCAAAATCACA 19829 29 100.0 32 ............................. ATGACCAAACTAACGGCCATTGGCTCAACTAA 19768 29 100.0 32 ............................. CCGGATCGGCTGGCCAATCAACTGGCGATGCA 19707 29 100.0 32 ............................. GCAACGTCACTGACTACGCGGTGATCGAGGCT 19646 29 100.0 32 ............................. CCGCCCGCCGGCAGATCGGTCGCGACATGATC 19585 29 100.0 33 ............................. CACAGACAGCCACCCCCTGGCTGGAAGGCGCAG 19523 29 100.0 32 ............................. GGCCGCGCGGCGCGGACGGCGCGACCGTCACC 19462 29 100.0 32 ............................. GTCAACGCCCAGGTCAACGAACTGCTGAAACG 19401 29 100.0 32 ............................. CTGCATCACCAGCAGCACACAGATACATCTGG 19340 29 100.0 32 ............................. GTCGACAACACGGACGCGGTGCAGAGTGTGCA 19279 29 100.0 32 ............................. TATGGGAATGCGGCCAGAGCTGAGAGCGTGAA 19218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTAGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAACCGGGGGCATGAAGATGGCAACGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGTTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTTGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGACTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGT # Right flank : TACGCCCCGGTAAGCTCGTTGCGGGTCAGGTCGTGTTCCCCGTGCAGCCGGCGAACGGTTTGGCAGGCTGTTCTTTAGTTGCGTAGGCGGATAGTCTGGCGTGCGATGGTTCCGCCCGCACGTGCGTGCGGATGAAAAGGGAACAGGGTGCGGCGAGTCTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCGGATGCCACTGACTTCGGTCGGGAAGGCGGGCGAAGTGTCAAGCCGTGAGCCAGGAGACCTGCCATCGAATCCATCGATCCTCCAACTCGTCGCGCGGTGGGCGCGATCAAGGAACCTCTATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCTTCCTCAGCTACGCAACCGCTGTCGGCGCCTTTGGCCTGACTGCCAAACTGGCGCGTGATGCCATTCGCGACAACGGCGGGGCGACCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13251-9684 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYE01000087.1 Pseudomonas mendocina strain EF27 EF27-87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13250 32 100.0 33 ................................ GGTACCGACATTGGCCGCGCCCGCGTCGATAAG 13185 32 100.0 36 ................................ TGCTAGAGGTGATATATGTGCAAAGATTGCGCAGCA 13117 32 100.0 33 ................................ TCGGCGGCAGGCGTGACGGCGATCAGCAGGGCC 13052 32 100.0 34 ................................ ATCGTCTACGGCGAGACTATGCGAAAGCTGGAGG 12986 32 100.0 35 ................................ TTTGATCGAGAGATCAAGCCAATCAACGATGCGAT 12919 32 100.0 35 ................................ TGCTGCAAGCATTCGCACAAGGTGGCGAAGCAGGC 12852 32 100.0 35 ................................ CCGAGATAACCTCACAACTAACTGGCATGGGACTT 12785 32 100.0 36 ................................ AGTATGGCTGAACAGGCCGCGATTCTCGCGGCGACG 12717 32 100.0 34 ................................ ACCGCCACCCTGGCCAAAGTCTGCAGGGTTAGCG 12651 32 100.0 33 ................................ ATCCGCGCCAAGTACGCACCTGCCTACCTGGGC 12586 32 100.0 35 ................................ AATATATTCTCAGTACCGCCCCGTGTCGCCGTAAT 12519 32 100.0 37 ................................ TCGGCGTTCACCAGTTTCTTGGCCGCTTCCTCGGCGG 12450 32 100.0 34 ................................ GTGCCGCGCGGCAACTCGAACTTCGGGCGCAGCT 12384 32 100.0 35 ................................ GCTTGGTTGCCCATCTGCAATTGCCGGGTGAATAA 12317 32 100.0 35 ................................ GTGTTTGATCGTGAGATTGCGCGTCAATGGCTGAC 12250 32 100.0 35 ................................ AACACCTGCCTAGTCGGGTTATACGGAGTAAACAC 12183 32 100.0 34 ................................ GCACCATTAACGTCAATCTCTGGGGCATATTCGC 12117 32 100.0 34 ................................ AGCGCAAGGGCGGTAATTCAGTACGCTGACGCAT 12051 32 100.0 33 ................................ GGTATCGCATCCGTAAACCCAGCAGAGCGCGGC 11986 32 100.0 35 ................................ GCGTATAAGCGGACGGGGTTTAAGTGTGAGGTCAT 11919 32 100.0 36 ................................ GCCATCATGGCCGCGCTCTTGGGTGCTGCTGAGCTT 11851 32 100.0 37 ................................ GGCCAAGAGATCCCAGCCGGCCTAGTTCCGCCAGAGT 11782 32 100.0 35 ................................ AGCAGCTAGGCAAGTCTAGCCAATCAACATCTAGC 11715 32 100.0 34 ................................ GTTCGCGTAGGCAACAACCTAACAGCACTGGTCG 11649 32 100.0 35 ................................ GTTGCGACGGTGACGTCGCCGTCTCTATGGATGGC 11582 32 100.0 34 ................................ GGGAACACGACGCGGGTTGTTTTGGTGTCGCAGG 11516 32 100.0 34 ................................ TTCCTGACCATCGCGTCAGGCACTGCATTCGCAC 11450 32 100.0 37 ................................ AGCGCTCATATCGTGAAAGCAGCGGACTCCATCTAGC 11381 32 100.0 35 ................................ GAACGCGGGGGCCGCCGTTGATGGCGGAGAGTAGC 11314 32 100.0 34 ................................ GGCAGGCTGCGAGCCACCCTCGGGCTGCGAGTCG 11248 32 100.0 34 ................................ AACGGCGACGCCACGCCCGAAAACATCGCCCAGG 11182 32 100.0 34 ................................ AGCGCGGCACCACCCTGAGAAAGGTCGAGAACAC 11116 32 100.0 34 ................................ AACTCTGACCAGTACACAGGCGAGGCAAAGGACG 11050 32 100.0 35 ................................ ACCAACACGGGCGGACGGTACGGCAGCCGGCACGG 10983 32 100.0 35 ................................ GGCGTCATTGGGTGGCGGCGATTCTCCAGATGGTC 10916 32 100.0 37 ................................ GCCATGCACCACAGCGCAATCGCCGCCCAGTCCAAAT 10847 32 100.0 36 ................................ GCGCTCGACCTCCCCCGTTTCCAGATCGGGGATTTC 10779 32 100.0 34 ................................ TATTTCTACCGCGACGCGACGCGCATCTGCCTGG 10713 32 100.0 32 ................................ TTACGGCAATTGCACAAACGTAATTGCATGGA 10649 32 100.0 33 ................................ TGCGCGTAGTTGTTTGATCAGTGCCTGGCTATC 10584 32 100.0 35 ................................ ATCGCCAATGATTGCAGGCAAGCGGGGGCGTTCGC 10517 32 100.0 35 ................................ ATTATTCCGCCGCTGGAGTTTAGCGGGCGCCCAGA 10450 32 100.0 34 ................................ AACAAGGGGCGGCCGACTGCGCAGCATATCAAGC 10384 32 100.0 34 ................................ TCGGACATGCGCGCAGGCAACAGCGCGAGCGCAG 10318 32 100.0 34 ................................ GACACCAAGGCCGAGGCCCAGCGCTGGGCGGCTG 10252 32 100.0 35 ................................ GCCGCAATATGCTTGTGCGGACCTTCAAGCCACAC 10185 32 100.0 35 ................................ TTCATCGCCTCGCGCAGATCGGTGACGAAACTTTC 10118 32 100.0 36 ................................ ACGTTCGCTGGATCGGCCGGCGCATTCAGCTGCAGC 10050 32 100.0 36 ................................ TGCGCGTAGTTGTTTGATCAGTGCCTGGCTATCCAT 9982 32 100.0 35 ................................ TATTGTGTGAGGCGCGCAATGCTAATCCCAACCAA 9915 32 100.0 33 ................................ AATGGCTATCGCCTTGAGGGTGGCCGCCTGCTG 9850 32 100.0 35 ................................ AGCTCAATAGACCAGGCGATTGCAGCACGCAAGGA 9783 32 100.0 34 ................................ TGGTACTTGTACAAGAGCGGCGTTGACGAACAGG 9717 32 84.4 0 .............T........A..GCC.... | G,C [9687,9693] ========== ====== ====== ====== ================================ ===================================== ================== 54 32 99.7 35 GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Left flank : TACCCACCCTTCATCTGGAAGTGAGCCACGCCCATGATGGTTCTGGTGAGTTATGACGTAAGCACCGAAGGCGACGGCGCCCGCCGCCTGCGCCGCGTCGCCCGCGCCTGCCTCGACTACGGCCAGCGCGCCCAGTACTCGGTGTTCGAGATCGAAGTCGATCCGGCGCAATGGGCCATGCTCAAGAGCCGGCTGTGCGACCTGATTGACCCGGACGTCGACAGCCTGCGCTTCTACTTTCTCGGCAGTAACTGGCAGCGCCGTGTCGAACACGTCGGCGCCAAACCCGTACTCGACCTGAATGGCCCGCTGATTCTCTGAATTGCGAACCCCAAGCAGCCGACAAAACCCCGGCAGGTTCGCACGCTCTTTAAAAATACGGATGTTCTGATTTTGTGCGTTGGTACTGTTCTCAAGCAATCTGGCTAATGTGTCTTAACTTGCAGGTTCGCATAAATTAAGAATTTTCACTGGGCAGATCAGTGAGTTATAAGTGGGGG # Right flank : CCATGACCGTTCGTCGGTTTACATGTTGCCAGCTAGGGCCCTCGTACCTGAGTGCCTGCCGTGACCCTACAGGCAGGGTACTTTCAGTTTTAGGGGTATGTCTCTTTGCTTGCTCTGGCTGATCGACCGGTTTTATTGATCTGTAGGCTATATCTTCGACTCCTGTCCCCGCACCATTTCCAGCAAAGGGTCAGCTTCGGCTGACCCTTTGTCGTATCAGCGCTGAAAATTCCCTCGCGTTTCTGTCAAAGCCGGTGTGATGATGATTTTCGGCTCAGGCGCGTGACGTCTGGCCCTGACTCAGATGGGAGTTGCTCATGTTCATTCGTTCCCTCGTATTGATCCTGGCGACGGCGTTCGTCAGCGCTGCGTTCGCCGATCAGCCGCAGACCATTCGCGTCATTCCCAAGAGCTACGTCAGCCCCGGTGCCAGTGGCAGCGTCTCGGGCTCGTCCAGTTATCAGCAGCACAATCTCTACGGTGGGCAGCGTCTGCCGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //