Array 1 45154-46702 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFX01000007.1 Staphylococcus agnetis strain 723_310714_2_2_spleen contig0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45154 36 100.0 30 .................................... GATATGTTTTGGACGTTAACATTTGATCCG 45220 36 100.0 30 .................................... TCGATATGTTTTGGACACTAACATTTGATC 45286 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 45352 36 100.0 30 .................................... CTGAATCCGATGGATAAAAAAGCCTATAAC 45418 36 100.0 30 .................................... ATATATTTTTCTTCTGATTCAATTAGGCTC 45484 36 100.0 29 .................................... CGTAACTAGAAATGGTAAGCGTGAATGTT 45549 36 100.0 30 .................................... ATTCGCAATATCAATTGAAAAACCAATCAC 45615 36 100.0 29 .................................... GTAATTTAGAACCAACTTTAGTCGACTCA 45680 36 100.0 30 .................................... GCACGATATCAACTAATATATCGACGAAAC 45746 36 100.0 29 .................................... TTTGTCTCTTTTGATATTTAGTTAATGAC 45811 36 100.0 30 .................................... AAGTGAGATTACTTTCTGAACACAACAATA 45877 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 45943 36 100.0 30 .................................... GTATGACATGGCTACAAAAGACGGTACAAT 46009 36 100.0 30 .................................... ATGGAACAGTTAATGAAGATAGCATTAAAC 46075 36 100.0 29 .................................... TAAAATTTTGCGATTCGTTCTTTCAGCTT 46140 36 100.0 30 .................................... AAAGGACTAGAGAAATCTTTTGTTCCGTCT 46206 36 100.0 30 .................................... ATCATTTTCAGGTTCTTCATCATCAATATT 46272 36 100.0 31 .................................... CTGGAGACGCACGCTATACTCAATGGATGGA 46339 36 100.0 30 .................................... ATGCGTTGATTACGGGTATTACGGGTGGTG 46405 36 100.0 30 .................................... CTTATGGGAGTTCACAGATTGCAGATGATA 46471 36 100.0 29 .................................... TTTCTAAAAGAAACAACTTTATAACTCCA 46536 36 100.0 30 .................................... GATGATTGACTGGCAACTTATTGAAGTTGG 46602 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 46667 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.1 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGGCAAAAATAGTCAGGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTCAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //