Array 1 3241788-3238039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQS01000028.1 Azospirillum sp. TSA6c Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3241787 29 100.0 32 ............................. CCCGGCATCGTCAAGGACGAGAGCGCGACGCT 3241726 29 89.7 32 ...........G..C.A............ GTCAGTTTTTTAGTTTCGTCTCCGTCGGCTCC 3241665 29 89.7 33 .........A..T........C....... ATCCAGGAAGCCGTCATCGTGCCGATCACGCCC 3241603 28 93.1 32 ................A....-....... GCACCGCAGGCCCGATAGGCGGGATGCTCACA 3241543 29 82.8 32 .T.......C..T...T...T........ TCGGTGGTCTCCTGCGCATGCGCGCTTGTGGG 3241482 29 89.7 32 ...........G........AC....... GCGCGGAGGCGAGGGAGAAACTTCGCCTCATC 3241421 29 86.2 32 ...........G..AA.......C..... ACCGGAACACCAGTCTAGAAGCACCCACAGGG 3241360 29 89.7 32 .T.......T..T................ GTCCAGGCCGTGCGTGCCGTCCCAGTCGAGCC 3241299 29 89.7 31 ...........GT........C....... GCGGTGCCGGTCGTGTGCGGCAAACACCCGG 3241239 29 89.7 32 ...........G..G..........T... ATTGCCGGATGGGCGGAAGAGGGCCGCGAGTT T [3241234] 3241177 29 89.7 32 T.........TG................. TCGGCCTGCGCGCGGGCCTGCTGGGCAGCGAT 3241116 29 82.8 32 ...........G..G....A..C..G... GTCAAGACCAACGAGGCGACGGGCAACCTCAA 3241055 29 86.2 32 .........TT....A.A........... GACCGGGTCTCGAAGTCACCCTCCATGCCCTA T [3241049] 3240993 29 96.6 33 ...........G................. ACCGTCCACCGGTCGCAGGGCAGCACGTTCGCT 3240931 29 86.2 32 ..T.......TGT................ CGCCAGACGCCGGCGGACTGCCACACCGCCGC 3240870 29 96.6 32 .............G............... CAGGTCCAGCAGATGTCGGTGATCAGCTTGCC 3240809 29 96.6 32 .....T....................... CTGTACCTCCCGGCAGAGGCCCTGACCCTCGT G [3240787] 3240747 29 96.6 32 ....................A........ GCGCCACCATCGCGCGGGTGGTGGAGCGCGCC 3240686 29 89.7 32 ...A............T....C....... CTGGATTTCGCCGTCGACACCGGCGTCATCAT 3240625 29 96.6 32 ...........G................. GACTACGAGGCCATCCTCTACCAGAAGATGAA 3240564 28 82.8 32 .....T....TG....A....-....... TAGTAGATCGTCGCCTCGTTCTGGTCGGCGAA 3240504 29 86.2 32 .T........A...A..C........... CAGCACACCATGGAGCATGGCGAAATGCTGGC 3240443 28 82.8 31 T..A........-..........A.C... TGCAGGCCTCCGCGACCGTCCGCGGTGCTGC 3240384 29 89.7 32 ..........TG....A............ CTGGAGGTGGTCCGCCGGAAAGCCGACCGACC T [3240382] 3240322 29 93.1 32 ...........G.............G... GCGTCCAGAGCCGGCCGGTAAGCCGCCGTCTG 3240261 29 79.3 32 ........G..G...........CCTG.. TCCTGAACGTCGTGGACGGCATCGCGCAGCCT 3240200 27 86.2 32 ..A........G.--.............. CAACGGAGGGAGGTGCGGCTGTTCTCGATTAG 3240141 29 89.7 32 ...........G....TA........... AAGACGCTTGTTGTTACGAATCAGAAGAGCGG 3240080 29 96.6 32 ...C......................... AAGGCCCAGCGCGATGGCTGCGACCTGAAGGC 3240019 29 86.2 32 .......T...G.......A........A CGCTCTTCCAGTTTCGCCATTCGTTTCTGGTG 3239958 29 79.3 32 .TT.......AG....G....T....... TTGTCGGGGATCGGCACGCCCATCTGGCGCAG 3239897 29 86.2 32 ........T..G....T....C....... ATGTGCGCCTGATGGACCTGCTGCGGCCCGCC 3239836 29 100.0 32 ............................. GTTGTCGGGCTGGCAAAGGCCGGGGTTCCATG 3239775 29 100.0 32 ............................. TTCTGCGACAGCATGGCGATAACCGTACCGGT 3239714 29 82.8 32 ..T.............T..AAT....... TCCTGCTCGGATAAGCCGATGACGCGTAGGCT 3239653 29 89.7 32 ........TT.C................. TCGGGAGCCCAGGCGCCGTAGCGCTTCACACC 3239592 29 82.8 32 ........T..G....T....C..C.... AAGGCGGACAAGGACCGGGCCGATTACCTGAA 3239531 29 89.7 32 ...........GT...........G.... GAGTGGACCGAAGAATTCTTCGACTACCAGAA 3239470 29 82.8 31 .....T...A.....A........G...A CTCATCGCCATCGCTCCGAACGCCAACAGCT 3239410 29 93.1 32 ...........G..G.............. TGATCGGCGGTGGTCATGGAGCAGCCCTCCTT A [3239408] 3239348 29 96.6 32 ..T.......................... GCGCAGGACGTGGAACTGGTCAATCCGGCGGC 3239287 29 100.0 32 ............................. ACGCGGCGGCGGTTGACCGAGAGGCCGTCGCA G [3239265] 3239225 29 86.2 32 .....A...A.G.........C....... GTCAACCAGCTGGAGGTCGACCGCGACATGCA 3239164 29 86.2 32 A.T.......T..........A....... TCTACCTGATTGGTGAACGGCAACGCCGGCTC C [3239155] 3239102 29 100.0 32 ............................. CAGTCCGGCCAGCTCAAGGCGCTGGATGTGGT 3239041 29 100.0 32 ............................. TCGCTGTAGGACAGCCAGCGGGTGACGGTGAC 3238980 29 96.6 32 .................A........... GGCTTTGTCCACCACACCTGCGGCCTAGTCGA 3238919 29 100.0 32 ............................. CCGCCTAACCTGACCGCCCGCGCCCGCTCCGC 3238858 29 93.1 32 .......T...G................. TAGCCAGCGCCCGGCGACACCGGGCGGACCGG 3238797 29 96.6 32 ..............A.............. CCGATCGAGCACACCGTTGATGTTGCCGACAA 3238736 29 100.0 32 ............................. CCACCGAAGGCCACGTTCATGCTTGTTCCTAC 3238675 29 100.0 32 ............................. ACCGCCCAGACCAATCCAATCGCGACGGCGAT 3238614 29 89.7 31 ...........GT........T....... TGCCAATAGATGCCGATGCGGTTGAAGGCGC 3238554 29 86.2 32 ...........C..G........A.G... GCTGACCACACCCCCACAGACGACACCGTGCA TA [3238550] 3238491 29 82.8 32 ..T....T...G..G...T.......... TAGCTGATCGTCTCAGGGCGTGCGCTGTCTGC 3238430 28 96.6 32 .....................-....... ACGATGTACCGGGACGAGACGGTCGCGTTCGG 3238370 27 93.1 32 ............--............... GACAACCCGCAACGGCGCGCGGTCATCAAGGG 3238311 29 93.1 32 T..........G................. CCGTTCTTCTGCCCCCAGGCAACCACCTTCTC 3238250 29 93.1 32 ...........GT................ CAGGCCGAGCACCTGATCGGCGGCTATCTCGG 3238189 29 86.2 32 ...........GT..........A....A TCGCCATAGCCGAAGGACACCAAGGCGCCCGG 3238128 29 96.6 31 .....A....................... ACGTTCTATGCGGTAACGAGCAGCGCCATCA 3238068 29 82.8 0 .....T.....G.........C....TT. | T [3238058] ========== ====== ====== ====== ============================= ================================= ================== 62 29 90.8 32 CCCTTCCCCGCACATGCGGGGGTGAACCG # Left flank : ATGAACGCTGGGATGACACGGCCCGGCGCGTCATGCCGGGCTGGCTGGCACCGCGGTTGGAGAAGATCGGTCTGCAGGTCTCGGAGGGCGACATCGTCGTCGAGGGATCGGCCAAGCACGAGTTCCCGCATGACCGCGGCGGCCGGCCGGTGACGGTCCGCACTGTGGATCTCTCGGGCATCGCCACGGTCACCGACCCGGCGACGCTCGCGTCCGGCATCCTCAACGGCATCGGCAGCGCCAAGATCTACGGCTGTGGCCTGCTGCTGCTGCGGAAGATTGCGTGACGCCGGGCTTACCGCCTCACCTTCCGCACTGCCGACAAGTCCAGACGATTGCCAATCGACAGTGACGGGTTTCCGTTGGTGGGCTTCTGCCCCGAAGATGGGTAAGAAGGGCAGGGTTCTTGGATATGGTGAAGACTGCAGCAAGTGCGGGAAGAAGTTGGTGGACTTCCCGCATAACGTTTCCATTTTTCACTTCAATGGCTTCCAGCCATA # Right flank : CAGCGGATACCTTCAGGCCATCATCGATTCACCCCCGCTCAGGGGTTTGCTTGCAGCGGGCCGGGCTCGACACCGGCTGGGTTCATCGGCGGCTATCGCCCTTGGGGGATAGTGGCATCGCCAATCCGCTTTCGCGTCCGAGGTCATCCTCGGCCTGACCCATGTTCGCCTTACCGCTTATCCCTTGTGCTCCGCCCTGTCCTCAGTGAAGGCGATCAGTTCCGGCATTCCGAAAACACCGACTGAGGCGAGATCGGGGGTCCAGGTCGGTTCGACCCTCAGGTAGGACAGCGGATCCCCCCACAGTAGCCCGATGAATGTCTCAGCGACGATACGCGCTCCCACCGGACCGAGATGGTGCGCGCTGCACAGCAACTCGGCCTCCTTTAGGACGTAGTACCAGAGCGGCGTGTTGCCGATGAGTGATGGCTGTGTGACCTTCAACTCTTCGGGCGACAGCGGCTCGACGCCCATGGCTCGCGCCACGCGCTCGCCGCAGG # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCACATGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [45-65] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //