Array 1 2221392-2220041 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP006828.1 Ornithobacterium rhinotracheale ORT-UMN 88 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
   2221391	    47	 100.0	    30	...............................................	CCTTGCTACCACGATATAATTAAATATCGT	
   2221314	    47	 100.0	    29	...............................................	CTATGCTCTATGTAAAAATCTTTACGCTC 	
   2221238	    47	 100.0	    30	...............................................	TTGTTCTTTTAATTTAGCTTGTGCTTTCTC	
   2221161	    47	 100.0	    29	...............................................	GTATGAGGTTATTAATTAATCGAGAAGAT 	
   2221085	    47	 100.0	    30	...............................................	AACTCTCTCTTGCAGTAATATCCCCCTATA	
   2221008	    47	 100.0	    30	...............................................	CAGTCTTCCATCACTTTGCTCTTTTAGATT	
   2220931	    47	 100.0	    30	...............................................	TAAATAGTCTAAACGAATCTTTTCAAGTTT	
   2220854	    47	 100.0	    30	...............................................	TAGGACCAGATTTAAACACTTCATCTGTTT	
   2220777	    47	 100.0	    30	...............................................	CCTGCGCTGTGGCTAAATCTTTTGCGTGTT	
   2220700	    47	 100.0	    29	...............................................	TGTTGTAAGTCCACTCGCAGGGAATGCCA 	
   2220624	    47	 100.0	    30	...............................................	ACATAAACATCCGTCACATTCTGACCATTT	
   2220547	    47	 100.0	    29	...............................................	GGTGTTGGTTATCACCAATTAAGAAATTG 	
   2220471	    47	 100.0	    29	...............................................	TATGTGCGTTAACTTAGCTTCTGAAATTT 	
   2220395	    47	 100.0	    30	...............................................	GAAATTCCTCGTCAGCTTCAAATTCTATAA	
   2220318	    47	 100.0	    30	...............................................	CCATTTTTAATCTATTTTAATTTACATAAA	
   2220241	    47	 100.0	    30	...............................................	TAACCTAAGTTTAATCCTGTGATCCCTTCG	
   2220164	    47	 100.0	    30	...............................................	TAGATATTGTTTAGCCGTTAAGCGGTTCAT	
   2220087	    47	  87.2	     0	.........................T..T....G.C.T...T.....	|                             	
==========	======	======	======	===============================================	==============================	==================
        18	    47	  99.3	    30	CTTGTGATTACTCACACAAAAATAAGAACTTGAAAGCAAATCACAAC	                              	       

# Left flank :   AGAAGGCTCTAGAAGAAAAATCGCTTATCCTGAATTTTGCTAAACCTATGGAAGAACTTTTCACTCGCTTAAACCAATATCGCTCTATGTGGATTCTTGTATCATTTGACCTGCCTACGGAAACCAAGCTCGACCGTAAAAGAGCTAGCAAATTTAGAAAACAATTGCTAGAAGATGGATTCTCTATGTTTCAATTTTCAATTTATATGCGATTCTGTTCAAGCCGAGAAAACACAGAAGTGCACATAAAGCGAGTAAAAGACATTTTACCCAAACATGGGCGTGTAGCCATTTTTAGAATCACCGACAAACAGTTCGGTATGACAGAAATATTCCATAGTACCAAAGAGGTGGAAAAACCACCCATGTACCAGCAATTGGAACTTTTCTAGAATTAAAAAAATTATCAAAAATTTACTTCAAATAAAAAAAGGTTGCAGATTTCTATAATCCTAGCAACCTTTTCAACTTTTTGATTTACAAGCAAAAACAAGAAGTAT
# Right flank :  ACCCTACCCCATCTCCTTGCCTTGCATCGACTTGTGATTACTCACACAAAAAAACCCGTAGTGCATTATAAAAAAGGTTGCCCATGAGCCTAAAGAAAAGTAAATTGCATTGGTTACCAATCAAATACAATTATGAGCAATCTAGAGGCAAGTTACAATTTTATTTTGAATAAACTAATAGAATTTTCAGGAACTGAAAATTTCTATTTTAAACCAGTGAAACCAAAATTATCTGATATAGAGCTGATAAGCTTAATTATTTTAGCAGAATTTAAATCTATCGATTCTGAGTACCAGCTTTTTAGAGAGATAAAAGGTTGGGCTATTGAATCTAAAATTGAAAGGAGTGTTTACAACAGAAGAAAACGAAAACTCTTCCCTTTTCTTGAAGAAATTAGGTGCAAAATGGTGAAAAAGTTCAATGATTTTGAAAACTATTTCTTGGTGGACAGCATGCCTTTAGAAGTGTGTAAATTATCCCGCTCTTCCAGAAGCAAAAT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTGTGATTACTCACACAAAAATAAGAACTTGAAAGCAAATCACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-4.40,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.68   Confidence: LOW] 

# Array family : NA
//