Array 1 1080-2204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDB01000017.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000224 CFSAN000224_contig0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1080 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 1141 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 1202 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 1263 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 1324 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 1385 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 1446 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 1507 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 1568 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 1629 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 1690 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 1751 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 1812 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 1873 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 1934 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 1995 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 2056 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 2117 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2177 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18327-19699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDB01000017.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000224 CFSAN000224_contig0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18327 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 18388 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 18449 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 18510 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 18571 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 18632 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 18693 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 18754 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 18815 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 18876 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 18937 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 18998 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 19059 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 19120 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 19181 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 19242 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 19303 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 19364 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 19426 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 19487 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 19548 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 19609 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 19670 29 96.6 0 ...............A............. | A [19697] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //