Array 1 127816-130034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018194.1 Scytonema sp. HK-05 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 127816 37 100.0 35 ..................................... TTATTTTCCCAAGCTGTACTATTAGTAGCTCCATT 127888 37 100.0 36 ..................................... CGATGGTTTTAGCCAAAATAATAAAGCACAAACATA 127961 37 100.0 36 ..................................... AAGATGAAATCATCCTAAGTAAAAATATGCCTGTTG 128034 37 100.0 35 ..................................... GTAATATTCGTCTCTATACAAACCTACGACAAGTG 128106 37 100.0 34 ..................................... TGTACTCAATAACATGAACCCAGGAAACCCCGAC 128177 37 100.0 38 ..................................... ATCCCGTTATCACTTTGTTTTGCAGAGTCTCCAGGTTG 128252 37 100.0 34 ..................................... TTGTCATGTTAATCTATGCAATTACAAGAACGAG 128323 37 100.0 35 ..................................... AGCAGTGAGGGTAATAGTATCTGTTAGTACATTTA 128395 37 100.0 35 ..................................... AGTTTTGTGTTTTTTCGCCTTACAACTGTGATTGA 128467 37 100.0 36 ..................................... ACTATAAAAAAGTCAAAGGCTAGAGGTTCAAAAAAG 128540 37 100.0 35 ..................................... GAATATTTAATTATTAACAAAACCAACAATCCTGC 128612 37 100.0 42 ..................................... ACACTACCCAACCCGCCTTGCTGCCCCTCCTGGGCGACGCTG 128691 37 100.0 36 ..................................... AGCTTCCTTCGAGCAAATCCCACCGCGTCTCGAACC 128764 37 100.0 34 ..................................... TATTAACCTATCTTGAACACTAGTAGAGAATCCT 128835 37 100.0 41 ..................................... AGGCGCGATTACCCTTGTGGTTGAAGGAGACAACGCGCGAA 128913 37 100.0 35 ..................................... CTACTAGCCTTTTTTCACCTGTTCTGATTTTCCTT 128985 37 100.0 35 ..................................... TGTGTAATACCTGCTAAAGAGCGTTTCCGGCTTAT 129057 37 100.0 34 ..................................... CTGCAATTCACAAAACGAAAGGCGGCACCAAGGA 129128 37 100.0 34 ..................................... CCGTTGGCGCTTAATCCAACACTTGAAGCAACTG 129199 37 100.0 34 ..................................... AATTTGAATGGAATTTCAAGTCTTCGAGTAAGAG 129270 37 100.0 33 ..................................... CCTTGGTGAAGTACAAGTAGATATTACCTTTAA 129340 37 100.0 34 ..................................... TCGAAGCTGCCAATAGACAATTGACTAAAGAAAC 129411 37 100.0 35 ..................................... CTAATAAAATGGTATACATTCCAAAGAGATTTCAG 129483 37 100.0 40 ..................................... GCATAATCTCAACAAGGGGAACAAAGCCAAGCTTAAGGGT 129560 37 100.0 36 ..................................... CTGTACAGAGTGTGGCTTTGAATTCAAGGCAGAAAA 129633 37 100.0 34 ..................................... TTTAGGTGAAGTACAAGTAGATATTACTTTTAAT 129704 37 100.0 35 ..................................... TTATCGGATGCTTTAAGCGCTTCTAGTTTCAAGGT 129776 37 100.0 34 ..................................... CTAATTTTCTCAACATTGACCAGGTGCGTAGCTT 129847 37 97.3 115 ..................T.................. ATCGTTGCCTACATTTCGTAAGTACCTTTTTTAGTGTTACTCTTTGCGTCTTTGCGCCTTTGCGCGAGACAAAATAAGATTTATGCAAGAGATCTAATTGTGTCTGTGGTTTGAA 129999 36 70.3 0 ......GC...........GT.C...-.T.CA...TT | ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 30 37 98.9 38 GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Left flank : TCCTATATTTTCAATTGCATCATCTTGTGGTCGGCTGATTCCTCAGTGTGAGTTACGAATCATCCAGCAAACGATTCGGCAAGGAACAGCTTTTTTGGAGCGATAGCGCAGAGCGCCCGCCGAAGGCGATCGCACTTTAGAATGGCTGTTATAAAAATTGTCTTGCTTGTCGGTGGAGCTTCCCCAGAAGGCGATCGCACTCTAAAATGGTTGTCATAATAGGTAAAAGCAACGCGATTAGAGATATCTGCTGCGCGGAAGGGTGGGTGTTTTCTTAAACGGAAGTCAAAAAATCGCTGAACAACCCATGATACAAGGCTTTGAAGAGTTCATAACCAATTTACCATCCGCGCAATCTCTCAAAAGCTTGCCAAATAAAGGTTTTCGCTTGTATGATGAAACAGAAGATTTTGGAATCGCGTCTGAAAACGGTATGCTTTTACCGATTCGCGCAACTGAACCTAGAAAACTGAATATAGTAAGCCTTTCATATGCCAGCG # Right flank : TTCACAAGTTCGTAACGAATTAATTTCAGAAAGGCTCTGCGTTACTCTGCGCTGACTCCCTTCGGGTTCACCAGTCGCCTGCGGAGGGAAACCCTCCTGCAGCGCTGGTTCACCGCGTCCCTCTGCGTTTTAAAACGCTACGAATTAATGCAAAGCTGTACTTAGGAATTCAAACCTAAGTAAGTCGGCGCAAATAATCATCACTGGTTTGTAGTAGCGCTTTAGCGCTGTTCGCGCAGCGTGGCGTCAGCCATAGCGCTACTACGAGCCAAATACAGAAATTTTACTTTTCTTTACATAGTTTGGTTTTTTCTTGCCGACTTACTTACAGTCAATTCAAAATTTATTAATTATTTTTAAAATTTGAATTTTGAATTTTGAATTCTCGCGTTCGCGTAGCGTGTCCGTTCGGCGTTCGCCCTTGGCGTGCGCTCTGCGCTCAGCCGTGCCGAAGGCATAGGACTCAGCGAGGCTCAGGTGGATAATAAGTTCAATTTTTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 5515136-5517609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018194.1 Scytonema sp. HK-05 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5515136 37 100.0 34 ..................................... TTAATTGCTTGAGAAGAAGACATGGACAGAGTTG 5515207 37 100.0 36 ..................................... TTATCTGCCCAAACATCTTCCTCCACCTTGGCGATG 5515280 37 100.0 34 ..................................... GCAGCAAAGGTATCGGCACTGAAAAATAAAGTAT 5515351 37 100.0 33 ..................................... GAGCTAACCTTTCGGCATCACTACGGCTAATAC 5515421 37 100.0 35 ..................................... AAGAACATCACATACTTGGGCAATAACTTCTTCGG 5515493 37 100.0 35 ..................................... TAGAAATAAAGTCTGGAGGCACAGAAAAGAACTGG 5515565 37 100.0 38 ..................................... AGATACTGGTGAATTTTAACGCGCCTTGCTGAACGTCT 5515640 37 100.0 34 ..................................... GTCTTCACTTGTTCTAGCTCAATGGTCTTATCCG 5515711 37 100.0 36 ..................................... ATACGCTAAGTTGTTTAGTTTCTCACTTACTCTTCT 5515784 37 100.0 35 ..................................... CAATTAGTTCCTTTGGCAAAGTTAAGGCTTTTCCC 5515856 37 100.0 34 ..................................... TAGAAAGGAGTGTCAATAGTGGTAACTCGGAAAA 5515927 37 97.3 35 A.................................... AATACCGTTAACCATCGCGAAGCTCTACTGCAAGC 5515999 37 100.0 34 ..................................... CCAAGGAAATACCTACATTGCACTACCGCTAAGA 5516070 37 100.0 33 ..................................... TGGGAGCCAGCGTTACTCCTTTTGCGATCGCTC 5516140 37 100.0 34 ..................................... TTTTATAAGAATTACTCTCGACGCCTTGAGAATG 5516211 37 100.0 33 ..................................... ATCTTTAATGTGGTGGCTGCTATTTTTTACGCT 5516281 37 100.0 37 ..................................... CCGCTTTGTTTGCCCCTAGGGCAGTTTTTGCAATGGA 5516355 37 97.3 34 A.................................... ATTTTTCTACACAAGATGAAGCAGTTAGTGCAAG 5516426 37 97.3 35 A.................................... AGGAAGTACTCTTTTATGTAATAGCATATCAAATC 5516498 37 100.0 34 ..................................... ACTATCTATACACTCCCTTAAGCTAAGTTGATTG 5516569 37 97.3 34 A.................................... TGATGATAACCTTTTTCCCGATGCTGCGAATCCT 5516640 37 100.0 37 ..................................... TCCTCTATCTGCTTGTTCAGCGATCGCTTATCCAATA 5516714 37 97.3 35 C.................................... GGACGATTAATGTACCGTGGCGCGCTTGATGCTGT 5516786 37 100.0 34 ..................................... TCGTTGATGATAGTGACATCGGGATTACTAAAAA 5516857 37 97.3 33 ...........T......................... ATATGCAAAAACATTGAAGCACGGCTAGATGAG 5516927 37 97.3 34 ...........T......................... GATTGAGTAAAGTTATAACCTTTGCCACTTTGGT 5516998 37 97.3 35 ...........T......................... ATCTGAGTGGGCAGTGAGGCACGCAGTAAATCCCC 5517070 37 97.3 34 ...........T......................... ACGATTCACCCGCAATACCGCAGGCAATCGAGAG 5517141 37 97.3 35 ...........T......................... GGATCAGAGATGCATCTATCTTAGCGATTGAAAAC 5517213 37 97.3 35 ...........T......................... GGCAACGATTGCTTCGGCAAGCTTGGCAACTCTGG 5517285 37 97.3 38 ...........T......................... CCAATGCAGCCGGGCGCAAGTTCTCCTAAAAGAAAAGG 5517360 37 97.3 34 ...........T......................... CTTGAAATTGAAGATATGCCATCTATTGAAAAAG 5517431 37 97.3 34 ...........T......................... CGCATAGCACACGCCGAGACCTACTTTCGTATAA 5517502 37 97.3 33 ...........T......................... AGATCTCGGTCTTCGAGATGCGGCTATTTTGCA G [5517522] 5517573 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 35 37 98.8 35 GTTACAATTTCCACGAATCCCTATTAGGGATTGAAAC # Left flank : TATCTTCGTTGCTCAGACGGAACTCATCTGGTCAAAAGAACAATTCAATTGCAAGCAACTTGTGCGAAAATTTCCATAGGTCATGCCTTGCGTTTGAGTTTGAGTGCAGCGTGTTTCCCGGCTTATGCGATGAATCCTGGGAATAATTCAGCATTCGGTATAGATGCTGAAATTATCACATTGATGGTAAGTTGCGGGGGTGAGAGTTCATCGCAAATTTTATTGCCTGTCGTACCATCATCTTGATTCATCTGCGCGGAGGGGTGGGTGTTTTTTTGGACTGAAGTCAAAAAATCGCTGAACATCAAATGACACAAGACTTTGGGCAGATAATAACCAATTTCTCATCCGCGCAACCTCTCAAAAGCTTGCCAATTCAAGGTTTTTGCTTGTATGATTTAGGAGAAAGTTTGAGACTTGCGTCTGAAAACGGTATTCTTTTACCCATTCGCGCAACTGAACCTAGAAAAGTAAATATAGTAAGGATTTCCGGTGCCTGC # Right flank : CACTTGATAATTAACACGCGATCGCATTAACCCAGGTTACAATTTCTACGAATCCCTAACCTCGCGTAGGGTACTCAGTAATGCTTGAGCGGTGAAGGGTTTTGACAAGAAGTATTGGATGCCAAAACTTCTCTTTTGAGCAGTCGTCCAATTGCTCATCAGCCCGCTCATTGCAATGATTTGCACGTGGGGATTCATGCGTTGCAACGTGAGAATTGTGGTAGAACCATCTATGCCTGGCATCATCAGGTCTATCAACACCACACTAATCTCATCCTTGTACTGAGCGTAGAGTGCAAGTGCCTCAATTCCATCGCTGGCAGTTAAAACCTTATAATTATGGCTTTCCAAGGTACTTTTAGTGATTTGGCAGATAGTAACTTCGTCATCTACGACCAAAATCAATTCGCCATGACCATTTGGTAGTTCTACATCGGTTGCTGCTGGAGTTTCAGTGAGTTGGCTACTCGGCAAATACACTTGAAAGCGACTTCCCTTTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCCACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 6753872-6752963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018194.1 Scytonema sp. HK-05 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6753871 37 100.0 33 ..................................... GAAAATGTTGGAGGCGATCGCCGCGATGGACTC 6753801 37 100.0 34 ..................................... TTCGCTATTGTTATCGAATGAATCCAGAGCATTG 6753730 37 100.0 36 ..................................... TTAGTGGAATCAACTGAATAACTTTACCGCATAACT 6753657 37 100.0 34 ..................................... TTTGACGATGATGTGACGGCTCAGTGTACGTAGC 6753586 37 100.0 34 ..................................... TATATTTGCCTTTGTACAACGTTCTTAGTTCATC 6753515 37 100.0 36 ..................................... TTCTCAGCTTCTTCAGCTTCGACTGCATCTTTGATA 6753442 37 100.0 38 ..................................... CAAATCTGAGAATACCTAGAAATTTAGCAGCTTCGGAG 6753367 37 100.0 38 ..................................... TACGTCACGTTATCCCCGCAGTATGGCTTGGTGAGAAG 6753292 37 100.0 41 ..................................... TCTTGATTAAAACTTCTTAACATTGCTTGACAAAGAGTTAA 6753214 37 100.0 36 ..................................... TCCTGGGTGAGATATATCGGCTTCGTTTCTTGTTTC 6753141 37 100.0 34 ..................................... CCGTGAATAAAGTCTATTGCTGCTGCAAATAGCC 6753070 37 100.0 34 ..................................... AATAACATCCATCGAGCAATAAGCAATGCATCAC 6752999 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 99.8 36 GTTGCGACCTCTTTTAAAGAGGAAAAGGTGCTGAAAC # Left flank : CGGAATTTAGCCCAGGAATATGGCATATCTGTTTTGTCTAATCCTGTTAAAATTTCTGGTAGCATTATTAGTATCTGGCAAGGAAAAACAAAGTTGTGGGAGAATTTGGTGCATGGTGTTTGCAGGAGTGCAGATAACCCAAACAATCCCAATCCAAATCGACCTTGTTGGTGTGGTAATTCTGAAGACCGTCCATCTGGCTATGCAGTACGACAACATCAAGATTTTTGTTTAGTTACTGTATTTGATCCACAGGTGGAAGCGACATTGAAGCGTTTGGGGTTTCAACAGGTCTGGTGTTGATCATTCCTTTGACAATGTTGCGCGGATCAGGAGAAATGGCTGAAATGACGAAACTTCGTTGTCATCCGCGACGTAGACCACATAAGCGTTTCAGAGAATTAGACCTGTGCAGTTCTGGCAGATTGTAGTGATAATTATCGGGTTCCGCGCAAATGGCGGCTGGACACTAGGCAGGATAAGGGTTTGAATCAGGGTGA # Right flank : CCTTCAGTACCGAAAACCAAGTCATACCAAAATAAAAAGAAGCGAAGCCTTTTACCCGCTTCGCTTCTTTAAATTACTAATTACCAACCTAAAATTATCAATACCTTAACATCAAGTCTTCAGCCATCTAAACCGAATCATTCCTATCTTGAACATCTTTTAATCGCATTGTCCAAAACTGGATCGTATCAGCGATTTCAATCAATAAATCCGTTAATAATACCTGTTGATTAAAATTTAAATTCCTAAATCTATCCTGAAAGTCAGCCGTTGTCATCTCCGGCTCAATTTTTAAATCATTACCTACAATCTTACACAAAACCACCCGTGCAACTCCCCAAGCAAAATAACGCCGTTGTTCGTCTGAACCCGCTTCTGCATCGGGTATTATTCCATCTTTTAAAACAGGGGAACGCGACATTGCCCAGAAGCGTTCCATTCCCCAACTTGACACATAATCAGCAATACCACTGGCTGCACCTTGCCAATCTTTTAATTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCTCTTTTAAAGAGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 6756567-6755745 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018194.1 Scytonema sp. HK-05 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 6756566 35 97.1 36 ............C...................... GGAATGCTTTTCCAGAACGTAGTCCAGTAAATACTG 6756495 35 100.0 37 ................................... TATTCAGTAAGTACAGATGGAACCTGTTGGGGTTTGC 6756423 35 100.0 37 ................................... TTCTGCCACTCTTCAGATAGTCTACGAGGAAGAACTG 6756351 35 100.0 34 ................................... TATAATTTATCTTCTTCAATTCCTCGATAGAAAG 6756282 35 100.0 37 ................................... GCGAACAAGTATAAGGGAAATACTTTTTTGCAATCAG 6756210 35 100.0 36 ................................... GAGAATTTTTTCATCGGGCTGAGCAGAAGTAGAAAA 6756139 35 100.0 35 ................................... CTTCAGATAAACTTCCAGGCAGTTTCCTGGAACGA 6756069 35 100.0 38 ................................... TCAAAAACTTTTTCCTCTTCGCTGCCATCTGTCGATAT 6755996 35 100.0 39 ................................... TCATAGTCGTAGATGTCATTGATGGAATAAAGACCAAAG 6755922 35 100.0 37 ................................... AAAATGTGATAACTGACACCCTATTCAGGAGTTTTGG 6755850 35 100.0 35 ................................... AAATGAACCCAACCCATAGTAAAGGCTGGAAATAA 6755780 35 97.1 0 ..................................T | A [6755762] ========== ====== ====== ====== =================================== ======================================= ================== 12 35 99.5 37 GTTTGACTCTTGTTAAAGAGAAAAGGTGCTGAAAC # Left flank : CTTACCATGCCGCATCGCTTTTCGTTGCACAGATGCTATCTCTGGTCGCATGTCGGCTCTTGAACTGGAGAAGACGATTAGCACACAGAGCGATCGCCTAGCTACCATAAATCAGCAAATCCAACGTTTGCAACAGCAACAACTGGGTACTCGGTTGCAACGGGGGATGCAGTTAGCTCAGGAATTGGAGCAATTGAGCGCTGAGAGAGAGGAGTTGGTTGAGCAGTTGAGACAGAGCAATCAAAGAATAATGTTCAATTGGAAGTAAGCGACATTTGGAGTGTTTTCTTGTTTCTTTGTGATATTTTATGGGGGATGTAGGGAATCGCTCAAACCCTTATTCTGTCGTTGTATGCCGCAAATGCCTTTCCTGGTAAGGATTTGAAGTGTCCGTGGTGTTGATTTATTGAGAATTTTTATGAATTATTTGCTCTTAAATTTGACACCCACAAATTGGGGGGTGTAAAATGCTCTTACCACAAGGCTTGTAGAAGCCAAGG # Right flank : TTGTCGCTCTCTTCAGCACCAAAGCCTTTTATCAAGATTTGACCATTATTAATCAGCAAAAATATCAACTAAAACGCCCTATTTAGAACTAGTGGCTCTAACATTTAAACTTCTTAAATTAATAGGAAAAATTCATGTTGCCGTTACCAGAAACATTACCTAAGTGGTACACAGTTGAAGACACTCAAGAAAGAGGATGGACACCTGAAACTAAAGATATTATTGAAGGCAGTGGCAAGCCAGAGGTTATTAAGGCTTGGAAGAATGACCTGAATCTACAAAACTCAAAAAAGTTCACTGTTCGGCTTGATAGATTGCAAATTATTAGTCCCATTCAGGTGGGAGGTGGCAGTGTTTTTGAAGGCGGTATATTACCCGCTCAAATCGGTGGTGTTCCCTGCATTCCTGGTTCAAGCATTAGAGGTGTTTTACTAAAGTGGATAAAAGCGAAATGGGAAGGTTTACTAAGCAATGAAAGGGATTTTTGGCAAAGTTTAATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACTCTTGTTAAAGAGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 7499746-7500448 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018194.1 Scytonema sp. HK-05 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7499746 37 100.0 39 ..................................... TTGCAAAAAAAACTACTAGAATAATCTCGACCATAACAA 7499822 37 100.0 38 ..................................... AGAAGAATCTGCTGCTCTACATCCAGGCTCTATAAAAG 7499897 37 100.0 37 ..................................... GGGATCACAATACTTTCGATAAGAAAAGAAGCGATCG 7499971 37 100.0 37 ..................................... TTCTTAATAATTACGTCTTGAGACGCCGGAAAGTTAC 7500045 37 100.0 37 ..................................... TTCTGCTGAGCAGAACTGACAAGGCGCATTGTCACAA 7500119 37 100.0 35 ..................................... AGGAAATTGTCATCGAGGAGCCAGAGGACTCGAAC 7500191 37 100.0 35 ..................................... CAGATTGAATGCAATGATGCTGTGAAAATAATCCA 7500263 37 89.2 39 .G......G.......................T...C GACGGGAAGAGCAAATCTGTTACTGCTGTATGCAGCAAG 7500339 37 73.0 36 ...........T.......G.CAA.T.T.C...TG.. GGTTGAAAGGAATGTCACCTTCCCAATACTAGAAGA 7500412 37 70.3 0 ..G....A.G.T..G.T.....AT..AA........T | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 93.2 37 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TAATTCACTAATCTGAACCTTGAAAATATAATATTGTTATAACAGCGCCGCAGTTCATGCTCTTTCGAGCCTCTGTACTGTGAAAAATCTGGGTTAGTTTGGCAGTTGTCAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTTGGCAAAGCGAAGCGGGGGCGAAATCCCTGGAGTCCTTGCCAAAATCTTAAAACCCTTGTTCTATATTAGTTTCATAAACTAAGGTGTCAATTGATTTAGTTTTTTCAAATTAGATTGAAGAAGCTTTTTAGCAGCATTGTCAAATTTGTATGCGAAAAGCTTCAGTAACAAGGGTCTAGACGGGCAGA # Right flank : TTAATCGCTATTTTTTTGCAAAGAAAAGATTCTACCAGTTATAAAAAAGCAAGAGTGACAAACAATTAGTCGTTCAAACAAATGACAAATTGTTTGTCGCTCTAAAGTATCCTAGATTACTTGACTATACGAGTTTATTTTTTAGGGATTAAGCTCGGGGAAAAGTTTGTGATCTACTGACATTCAAGTAACACTGACAAATAATTTGTCACTGTACAATACTCAATAAGAGTCGGCTACATTAAATGACTATAAGACAAATAATTTGTCGCTTTACCACTTTTGACAAATAATTTGTCGCCACGGTCAAATAATTTGTCGCTCTACATTTGAAAGCGGGCGATGGGACTCGAACCCACGACGTTCACCTTGGGAAGGTGACATTCTACCACTGAATTACACCCGCAAATGGATGTTAGCCTCAATAAAGCTAACCCCCATTATAACACGATTTGCCCATTTCAACCAGTCGGTGGCAGATTCCTCACCACTCGATTTTC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //