Array 1 1-246 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CCYX01000042.1 Propionibacterium freudenreichii strain ITG P23, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                         	Insertion/Deletion
==========	======	======	======	================================	========================================	==================
         1	    32	 100.0	    40	................................	AGCGCATGGGAGAAGGCCCGGCAGGACGCCGTGGACATTG	
        73	    32	 100.0	    38	................................	GGCACCGGGCTCGACGTGGACCAGATGATCGCAAATTG  	
       143	    32	 100.0	    40	................................	CGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCAATTG	
       215	    32	  96.9	     0	.................A..............	|                                       	
==========	======	======	======	================================	========================================	==================
         4	    32	  99.2	    40	CCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	                                        	       

# Left flank :   |
# Right flank :  CGCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGAGCGAAAGAGCGATCATTCCGGGTATGGATCAAACCATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGCTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCG

# Questionable array : NO	 Score: 5.82
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.20,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//


Array 2 556-377 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CCYX01000042.1 Propionibacterium freudenreichii strain ITG P23, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                    	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	===================================	======================================	==================
       555	    35	  97.1	    36	...............T...................	GGTTTGATCCATACCCGGAATGATCGCTCTTTCGCT  	
       484	    35	 100.0	    38	...................................	CCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGACG	
       411	    35	  97.1	     0	............................A......	|                                     	
==========	======	======	======	===================================	======================================	==================
         3	    35	  98.1	    38	CCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	                                      	       

# Left flank :   CCCTCCGTGAGGAGGGACTTTGGCGGGTGTCGCAAATGCCCATCTATTGGCGTCAGCCTCAATGAAGGGGGCATGCCTTGCCGGCCCCGCCGGATTTAACCGTAGCGGGGGGAGCTGTGTGGGGGCACGTCTCGGCATCGCCAGTGCGTGACGAAAACGCCTTGTCATGGCGGCTGTCAGGTCCGGAAACGCCTAGGGCTCGTGCGCGGCCACGTGGCCTTGTCAGTGAGCGCTGATCGGGGTGACGGGTCCTCGCGCGGGTGGACGAGAGGGTGGGCGGTTGGACGGAATCGGTGGCTCTTGGCGCCACCGGGGGTGCGAAAAAGGGAAGGTGGGTCAGCTGGGCGTCTGCCCTACCTCCCACCTTCTCATGGCGAGTCTAGCTCTCGGCGCCGGCGGGAGTTCCGTGAGTTTCGGGACGTTGAACGGGTGGAGGGCTTCGCCCGGGGAGAGGGGCAACGCCACGTCAAGGCGCCATCGTCTCCGAGAGCTGGCGCAAG
# Right flank :  TACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAGGGCCCCTCCAGAAGGAGGGGCAATACGCAGATTGGAGGAAGCAAATGGGCAAGCAAATGCGCCTCAATGAAGGGTCCCTCCAGAAGGAGGGGCAATTGGGCAAGACGACTCTGTCCACGATTGAGGGTGACGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGCGATCATCTGGTCCACGTCGAGCCCGGTGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTCCACGGCGTCCTGCCGGGCCTTCTCCCATGCGCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGG

# Questionable array : NO	 Score: 5.57
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-12.30,-11.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [15.0-28.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.64   Confidence: LOW] 

# Array family : NA
//