Array 1 261102-261500 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSC01000002.1 Bifidobacterium adolescentis strain TF06-29 TF06-29.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 261102 36 100.0 34 .................................... CTGCGGTGCCGCGTCTGCATACGCGTTCGCCCGC 261172 36 100.0 37 .................................... ATATTCGTGGCGATCGGCTTCATTGGCTTATCGCAAT 261245 36 100.0 37 .................................... AGGGCGAGGCGTTCGGCAATCCAGCCCAGCGCGTCCA 261318 36 100.0 37 .................................... AAGAGTTTCCAGAATCAGCTCATCCAGACCGCTCGAG 261391 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 261465 36 86.1 0 ...........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 37 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : ACGACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTGCTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGTAAAGAGCAGGGCGAGCAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCTAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2573-3625 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSC01000008.1 Bifidobacterium adolescentis strain TF06-29 TF06-29.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2573 36 100.0 37 .................................... GTGACCGCGCTGGTCATGTTCAGCCCTAACAGTTCGA 2646 36 100.0 36 .................................... GCCGGTAGGTTTGACTGCGGGAACCGCGCGATGCGG 2718 36 100.0 34 .................................... CCATCATCGATACGTTGCTTGGTAATATCGTAAT 2788 36 100.0 36 .................................... CACCACCACGGACGGGGCAAGCACAAGCCTCGCCGA 2860 36 100.0 34 .................................... GCGCGTACTCCGCAAACGTCTGCGTCTTCATGAG 2930 36 100.0 35 .................................... ATGGTCAGATCGGCGCTTGGAATCTGCTCAGGATT 3001 36 100.0 37 .................................... ACCTTTATCGGACGAATGCGAAAAATCGGTGTTGCTG 3074 36 100.0 40 .................................... TTATGATACGAGACCAACGTCCGGTAGCAGCAATCTACCA 3150 36 100.0 38 .................................... TTTATGGTCACGTCGGGCAATATCGGCGGAGTCAACAA 3224 36 100.0 37 .................................... CACAAGTCATGGACGATTACGGAACAATGGTCATGTT 3297 36 100.0 39 .................................... CCAGGGATGGCGTCGGCCAACTGGTTCCAGTTCTCCGTC 3372 36 100.0 39 .................................... TCGTCACGCCGAAATATTCAGATAATTTCAATAGTGTAG 3447 36 100.0 35 .................................... AACTGTTCGGTCAGCGAAGCCGTGCCATTGACGCT 3518 36 100.0 36 .................................... TAGGGGACTGAATCGCGGAACAGCCGACTGGACATG 3590 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : GTTGTACGTGCGCGGATCGTGGATCGGCTGATGCATCGTCGGCGTTGGAGGGGATGATGTGGTCGCTCATTCGCTGAGGCTTTCTCTGAAGTGAATGCGGTGTTGCATACCATGGCGCGCAGTACATCAGCCTCGTGTGCACCACCAGGGTCGGGGAATTCGGCATGCTTCCCTCGGCCGGCACGGTCGGCGACTCGTACGACAACGCCATGGCCGGGAGCGCCGACGGCGCGTACAAGACCGAGCTCGTCTGGCGACGCAAGCCCTTCCGGGATTTGAGGGACCTGGAATTGGCGACGTTCCGGTGGGTCTCGTGGTGGAACTCGAAGCGTCTGCACCGGTCCTTGGGCTACAGGACACCGGAACGGACCGAAACCGAGTATTATGCAAACCAAGCGGCGCAAGCCGCCCCACTATAAGGGCGGAACAAAAATCAGGCCATATCAAAAAGCTTAGGAATTCCAGTCGTGCCAGCCGGGACCGTGCATGTGGCCGCATGG # Right flank : TAGTCACACTATAAAACACTGCAATGACACGTATCTCAAAGCTTTTTGCGAGAGGTCCTTCCCCTTGTCCAGATTAGAGATACATCCCCAGAATGCCCTCACACATAAGGCCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAAGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACGCTATATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 501-1117 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSC01000011.1 Bifidobacterium adolescentis strain TF06-29 TF06-29.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 501 34 85.7 39 G...A.-.T.A........................ TGAGGTCAAGTCATGCATGGCTGATTTCAAGAGCGGCAA 574 35 100.0 35 ................................... TAGATAATCGTAGGGGTCGATGCTGATGGTCACGC 644 35 100.0 40 ................................... TCGTGTTAAGTGTAGCTTAATCTCGATCAGGGTGTGTGTC 719 35 100.0 36 ................................... TTCGAAACCGCAGGAGCAGCCCCAGTCGGAGCAGCG 790 35 100.0 43 ................................... ACCAGAGCCGAAACAGTCACACGGCAGAAGCTCGCCGCCTGAA 868 35 94.3 39 .............C.T................... AAAGTGGCTCGATGAGGAGCATTACTTGGTCATCCTGCA 942 35 94.3 36 ...............T.T................. ATCGGTCCGCGAGACCTCCACCAGCCTCGAGATCCT 1013 35 97.1 37 ...............T................... AACCGTCATGCCGCCCTCGACCATCGTGACCTCGTCA 1085 33 85.7 0 ...............T......A.A...--..... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 95.2 38 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Left flank : GCTGACGGGCCTGGATCTGAACATGCGGTAGCCGCGCGGCGTGATGAACCCGCGGTCCAGCGAAGCGGCCAGCACCCTGCGGATCGGCCCGATCCTGAAACGGTCCTTGAATTCGTCGATGTGAGCGACCATCAACGCCGTGTCGGGTCGAGCCGCGCCGCGAAAAAAGCCGACGCCGTCGTCAATATCTCGTTCGCCCGCCTCAATCGCGCGACCTCGGCCCGCAAACTCTTCAACTCCGCCATCGCGTCTTCGGCCGACTGCTTGGTCTCCGCCGCGACCGTGGCGTCCGTCTTGTCGCGCCAACGGCGCAGCGTCTCCGGCGCGACCCCCAGATCCTTGGCGACCTGTTCGATCGCCTTGGTCTCCGACGAATACGAGCCGCGCGACTCGGTCGACAGCCTGACGGCCTTCGCCTTGAACTCCGGCGTGTGTCTCGTTCCTTTTGCCATGGTTCCATCATCTCCCATCGAGTTAGGGGAAATGCGGAACAAAAATCA # Right flank : GGGATGTGGTATTCTTACGGAAGAGCACCCCCGTTACCGTCTTTTCGATAGCTTCCGAGGTGCTCATTTGATTGTGGGTGATGTTCTTGGAGGAATGAAGGCACCCATATTTCGCTTGTGGAAGCTTCCAATGCGGAATTCTCAGGGTGGCTTTTTGATTCCACCCTCAGGTAGTTCAACGATTAGCTTCAGGTGGTATGCTGGCTTTTGTGAGAGGTCTCATTGGCACCATTCGGTGACATTGAGACCTTCATCTTTGCCTTATATTCGGTTGTTGATTTTCCGTATCCTGGGCAACATTTTGATTTCGCTTTTCCGATTCGCTTATTTGGCTTGTGTCTCTTCTACCGCTTACCGTCTCACCCCATCCCTGTACTATAGGGGGTAAAGAGGAGAGGACAATGGCACGATATGATTTTTGCCCGCAATGCGGCACTGCAAACGCGAATGGTGATTTTTGTATCAATTGCGGCGCGTCGTTGGTGACGTCTGATGATGTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //