Array 1 1-578 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCED01000127.1 Serratia marcescens strain EL114 contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 62 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 123 29 100.0 32 ............................. GCGCCGTCCGGGATAATCGGTTCTACGTTGAA 184 29 100.0 32 ............................. TGTTCTTCGTGCCGATGGCATACAACGGGCCG 245 29 100.0 32 ............................. AACTGGCCGCATTTGGGTTAACGCCCGAGGAC 306 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 367 29 100.0 32 ............................. TTAACGACGATCTGGCCGGAGTGGTAAACCGA 428 29 100.0 32 ............................. TTGAAGTAACTTATAGTGATGAGGGTGACCAC 489 29 100.0 32 ............................. CTGTAGAAGTGGTTTAATAGGCTGCGGCTATG 550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGCGCCGTCCGGGATAATCGGTTCTACGTTGAAATCTCGCTCCAGATTCTCCGGCTCAAGCGCCAGCGTGTGCACCAGCGAGCCGAACGTCAGCGCGTCGCTGCGTTCCCGGCCGATCGTTTTGATGACGTGGCGCCCGTGGTAATACATCAGGCTGATACGCGCGTCCTTCACCTGTGTGCTGCTGATGCCGTTCGCAGCGTGATAGGCTGTGTTTGAAATATCAGCGTAACGGCCTGGCTCGAAATACGCCTGCGCGCAATCTGCTGCAGGCTCACTTTCTTGTCGCTGCGCTAATTCCGCTTTTTCACCGTCGTTTGAGGCGTCATTGCATGTCTGCTCTGGTAACGGCTGCTGCTCGGCATCTTTGCTCGGCTCGCTATCAACCTGCACTGTAGCCAGCGGGGAGGCTTCGAAAAGACTGGACACATCGAAGCGGCCACCGCCTAAACTGACAAGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGCAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22549-22758 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCED01000222.1 Serratia marcescens strain EL114 contig222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22549 29 100.0 33 ............................. CGCTACGCCCGGCTTGCCGTAGATGCGTATTGC 22611 29 100.0 32 ............................. ATACTATAATCAGCTGGGTCAAGCCCTTTCCC 22672 29 100.0 32 ............................. CCGGCGCGACCGATCAGCTGGTTGGAGATTGG 22733 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : | # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8730-8518 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCED01000180.1 Serratia marcescens strain EL114 contig180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8729 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 8668 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 8607 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 8546 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CAGAGCTTCACTGCCGCACAGGCAGTTCGAATATGAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //