Array 1 56323-57074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYS01000046.1 Propionibacterium freudenreichii strain CIRM-BIA 119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================= ================== 56323 27 100.0 45 ........................... CATTGAGGCATCGCTTGGGAGGGTCGTCATGGCCATCATTGCGGT 56395 27 100.0 49 ........................... CATTGAGGCGAGGTACTGCGGCCCGCCGACAAGAACTTCCAGGCCGAAC 56471 27 100.0 46 ........................... CATTGAGGCGTCGATTCGGACGGTCAAGTAAATGTGGGAACCGATC 56544 27 100.0 49 ........................... CATTGAGGCGAGAAGGATGGGGCGCGGTGGCATCTGGTCGGTGCTAAGG 56620 27 100.0 45 ........................... CATTGAGGCGCACCACACGTCGGCGGTCGGCAGCATCGCGAGCGC 56692 27 100.0 46 ........................... NNNNNNNNNNGGGTGAATACCTGTGCACCCTGCTGGAATGCGCCCA 56765 27 100.0 45 ........................... CATTGAGGCAGTGGGTGTCACAAGGACAAAGCAAGAGGCCCCACC 56837 27 100.0 15 ........................... NNNNNNNNNNCAGCC Deletion [56879] 56879 22 51.9 6 .GCCT.AG............AA----- GTCCGG Deletion [56896] 56907 27 100.0 43 ........................... NNNNNNNNNNAGAATAGAGAACTTGACCTTCGGCGTTCTTCTT 56977 27 96.3 44 ..........................N NNNNNNNNNATAGCTGTAATGTTGTATGCCTCTTCGAGCGCCGT 57048 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================================= ================== 12 27 95.7 39 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCGGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCT # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGGGCCATGCCCTATGGTGGGAACGATGGGCTATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNACCAGAACTCGCCCAATGCCTTTCGAGCCGAAATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNGCGATTCGGGCTCATCGAATCACTGGGACCACGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCAACCATGGAAGGATCGGGCGGGGTGTACTGGTTATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNGATGGCCGGATGTGGAATTGGATTACCGTGGATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 60200-60621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYS01000046.1 Propionibacterium freudenreichii strain CIRM-BIA 119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================== ================== 60200 35 100.0 37 ................................... CGCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT 60272 35 100.0 39 ................................... CGTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAG 60346 35 97.1 62 .....T............................. CNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT 60443 35 97.1 38 ......T............................ CGTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG 60516 35 100.0 36 ................................... AGCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 60587 35 97.1 0 ...................A............... | ========== ====== ====== ====== =================================== ============================================================== ================== 6 35 98.6 43 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG # Left flank : NNNNNNNNCACCGAAGCGCCGTTGACCGACTGGGATGCCACCACAATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNAAGGGCCCGGCGGGCGCGCCGCTCCAGGCAGATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNNGCCGCTCTGAACGCCGCTCGGGACGCTGCTTGGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTCGGGAAGCTCACAGAATCCTGGCGCACGGTGGACATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNTGGATCCGGGGAATGGCACGCGTACGGAGATATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCACAGACACGTCAATGCCACGATCCATGTCGCTTCCTTATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTTCACGTTCGTGCCCACCCACCATCTG # Right flank : GCTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //