Array 1 251-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIJ01000024.1 Phocaeicola coprophilus DSM 18228 = JCM 13818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 250 33 100.0 33 ................................. TGTTTGTGTGATTTTTTACAAAACTAGCTTATT 184 33 97.0 33 ................................T GAAAAGAATTGATGAACTCAAGGTGGTTTATCA 118 33 100.0 33 ................................. GCTAGTTATTAACAGAACTGACGAAACAGAGGA 52 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 99.2 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : ATATTGATGATTATCCTGTATTTTTAATTAAATAGTGTATTATGTACATTCTAGTAACATATGATGTGGACACGACAAGTAAAGAAGGCGCTCGTCGTTTACGATGTGTGGCTAAAGCATGCCTTAACTATGGGCAAAGAGTACAAAATTCTGTATTTGAGTGTGAGGTTACTGAAGCACAGCTCTGTACATTAAAAAATATAATTGGCAATGTTATTGATACAAAACAAGATAGTGTCAGGTTTTATTATCTTAATCGAAACATAGCCAGAAGAGTAGAAGTTTTAGGGAAAGAAACATCATACGATGTAAATGATGTAATGATTATCTAAAGTGCGAAACTTATGTAATACACGTTTCCTTGAGTTTTCGCACATATTGAAATATAAGGAATTACATTTTTACATTTAGTATAATATAATCAGAACTGTATCTTAATTATTAATTTCGCAAAAGCTACAGTTTAAATATCTAGAAAACTGATACATATCTAAGAATCA # Right flank : AAATCTAGACATAGAAGGAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75427-74404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIJ01000011.1 Phocaeicola coprophilus DSM 18228 = JCM 13818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 75426 33 97.0 32 ................................T CAACTGGATTGACAAAAGGAACCGGAAGTTTC 75361 33 97.0 33 ................................T GCAAAAAGTAGAGGCATTGGCTGATTTCTTTGA 75295 33 100.0 33 ................................. TGTCATGGGGCGATATGGATGAAAATGGGAAAC 75229 33 100.0 33 ................................. GGAAGCCGGAGTCAATCCGGAAGTGATCATCAA 75163 33 100.0 33 ................................. AGACTTATCCCAAATTGAGGATCGGTAAATACA 75097 33 100.0 33 ................................. GTGTAGCCAGCGTGACAAACAACAACACGCAGA 75031 33 100.0 33 ................................. TAATTCTATGGCATAACTGTACCCGCATGGGTG 74965 33 97.0 32 ................................G TTGAAAAGTACAAGTACCAGTATATTGACAAG 74900 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 74834 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 74768 33 100.0 33 ................................. CTAAAACCTACTATATCGGCGAAGCTAAAAAGC 74702 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 74635 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 74568 33 97.0 32 ................................T TTACTCTTTTGATTATTTTTTGTTACATTTGC 74503 33 97.0 34 ................................T TTTGTATATAGGTTTTTCACGAAGGATATCCAGC 74436 33 90.9 0 .....................C..G..A..... | ========== ====== ====== ====== ================================= ================================== ================== 16 33 98.1 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : AAAATGAGACCATGATACAGAAAGATTACATTTCAAAGAACCACTCGAAGTTTCTCATCAAATATCACGTGATATTTGTATGCAAATACAGGAAGAAGCTACTCATTGGAGCAGTGGAATATGACATGAAGCAAATCATGCAGAACATATCAGACCTGTCAGACTTTAACATTGAGGTCATGGAAACCGACAAAGACCATATTCACATGATGATATGCAGCGAACCAAAACTCTCTCCGCTGCAAATCGTAAGGAGGCTAAAACAAATGTCAACAACTGCCATTTGGAAAAGACATGAAAATTACCTTAGACATGTATTTTACTGGGAAAACACATTTTGGACGGATGGATATTTTGTGTTATCAGTCGGAAATGTCAGTCAGGAAACCATCAAAAAATACATCGAAAAACAAGGGTAGCTGCGCTACCCCACATTTTTCATCCCCTAAACTGAAGATTTAGGGGTTTTCAAATGCGAGTTCCTATAAAACAGATGTTTA # Right flank : ATTTAATGGTACTCATATTTACTGATAGTCTGCTTCCACCGGTATTATCTCTTGAATCAGGCACGACAGATCCATCATTCCGGCTTCCTCCGGCACTTCCTCCGTTATCAGATCCTCGCTGCTCTTGAACAGGTTCAACGCTTCCTGCATCTGGTCTGTCTGCATTATCCACCTTGTCAGCTTTTTCTTCTGCTGTGGATCGTTCAGCTTGTTCTGGTCCGGATACGGTAGTATTACCGGTGCTTCCCATGTCATTGTCAGATCCGACTTTTTTGTCTGATCGTACGGATTTTCCCCGTTCTCCAGACTTAGGTCTATTGCTGACATTATTGTTTGCTCCACTTCCTTCTGTGTCAGTGGTCCGGGCTCCTCCTTTTGCACCGTTAAAGAGATTCCCCATTTGCTGTAATGAACGTATATCATCTTGAACTCGGCTATATAATTCTTCAAAGCTGTTTACCTGTTTCGCTCTGGCTTTGCTCTTAACCAGTGGAGCTATG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 77785-77221 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIJ01000011.1 Phocaeicola coprophilus DSM 18228 = JCM 13818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 77784 33 97.0 33 ................................A ATACACGTGCGCCGAAAAAGACACGTAAGACAA 77718 33 100.0 32 ................................. TGTTTCATAAGTTAGCAAGTGTCTAGCTGTAT 77653 33 100.0 33 ................................. CCGCCCAGCGACGGGTTGGCCCATCGCAGCAGG 77587 33 100.0 34 ................................. GATATTGGTGCTGTAAACTTTACGAGAGATAACC 77520 33 100.0 33 ................................. ACCGCTGAGTTTTTCTTGTAAGGAACATTGCCT 77454 33 97.0 33 ................................A ACATCAAAAAGCGCATAGCAAAGAAAGCTCTGG 77388 33 97.0 34 ................................C GGATGTTGTCAATATTGGAATAGCTGCATCCCAG 77321 33 97.0 35 ................................G ATTAACAGGGCAGAAGTCCTGGGCGGCAACGTCTG 77253 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Left flank : TAGAAGGAAAACCAATTTGTAT # Right flank : TAACTTTGTATTGCAAGGTGAACTACCGCTAAACTAAAGATTTAGCGGCTTCGGAGATACCAATACCTCCTCTCTTTTCCTGCTTCTTCCTGCCATTGCTTTTTAGGACACGAGGTCGGTCATCCACAAGAGGACAGTCCACAGGCTTGACTTTCCCACGCTCCGTGGGTAGGGCTTTCAAGCCAAATTCCTTGATGTTGCAAGCGGCATTGAAGTCCCGGTCGTGATGTGTACCACATTCCGGGCATGTCCAACTGCGCTCGCTAAGATTCAATCCTTTGTACACATGGCCGCATTTGCCGCAGGTCTTCGAACTTGGGGCAAAGCGGTCTATCTTAATGAGGTTCACACCATACCAACTGCACTTGTATTCAAGCAAAGTTAGGAACATACCGAAAGAAGCATCTCCTACGGCTTGTGCCAAATGGTGGTTACGCTGCATCCCTTTCACGTTCAAATCTTCCATGCAGATAGTGCGCACTTGGCTGTCGTGCGTGAGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIJ01000052.1 Phocaeicola coprophilus DSM 18228 = JCM 13818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 31 47 100.0 30 ............................................... GCATGCATGAATGTTCCGTAAGCAGCCCTT 108 47 100.0 30 ............................................... TACCGATTGCGTGAGATCCTTGCAGACAAA 185 47 100.0 30 ............................................... AGTTAAATGGAAATTATCGTTTGATGGATA 262 47 100.0 29 ............................................... GGATGCTTCAATCACCTCATGAGATTGAG 338 47 85.1 0 .............................T..G.GT.....G..CG. | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 97.0 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : TTAACTGGGGAGAGGTTGGTAATGTTTGTTG # Right flank : CACAATACCTTCGTCCGTTGAACTGGTCAATGCAAAAAAAACGACCGCACGATTGGCCCTCAACGACCGCACGATTGAGCTCCAACGACCGCATAATTTGCCTTGATCGACCGCACGATTCCGGAGGCCTGTCAGAATGAGTTTTCAGAGGCTGGAAATACCTTTGGGAGAGGTGAAATAAAGCCCGCGGGCTTTTTAAAAAACGTTTCGGGCTTTGAAGGAAAAGACTTCGGGCTTTTGAGTAAAACGTTTCGGCGTTTTTCTGTGCTTATGCTGAAGCTTTTCTGTTAAGAATCTTCTTGAGAATATTTTTTCTTGCAATGGCAAGTCCGGAGGACAACGGCTCATTGTCCAACAGGCTCAGAATGTTTTCAAGTTCTGACAATAAGTCAGTATGAAACTTGCACTGTTCGTATGAAAGCTTTATGCATAAGGCTCTGACTCCACATGAGTTTTCACAGGACGTAATTCCGGACAGGCAGTAATCGATGAAGTCGGTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1150-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIJ01000079.1 Phocaeicola coprophilus DSM 18228 = JCM 13818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1149 47 100.0 30 ............................................... CTATGCGGTGGATATTGACGGTGAGGTGTC 1072 47 100.0 29 ............................................... GAGTTGTCAAGCGTGCCGTATCTGGATCT 996 47 100.0 29 ............................................... TAGAAGGATCCGACACAGATACTATAATC 920 47 100.0 29 ............................................... AAGAAATTGCTAATATTAGCCCAAGCCCG 844 47 100.0 30 ............................................... ATATTTGCAATACCCAGCAAAATCTCCAAG 767 47 100.0 30 ............................................... GACTTGAACAAGAAACACAGAAAAAATCAA 690 47 100.0 30 ............................................... CGCAAAGGATATTAGCTCTTCGACATCTTT 613 47 100.0 30 ............................................... AAGCGGAGCAAACATTAATATGTTTGCGAA 536 47 100.0 29 ............................................... ATAGTAAAAAAAGTTAGTATCTTTGTAGT 460 47 100.0 30 ............................................... TTCCCTAGTATATTATACAAGATCACTACA 383 47 100.0 30 ............................................... AACATTCCTTTACTCTATTTTCTACGTTTT 306 47 100.0 30 ............................................... AAGACAGAAAGGTATGAGCAGCTTTAAGGA 229 47 100.0 29 ............................................... TTGAATAGCGCCTGTTTCTTTTCAAAATT 153 47 100.0 29 ............................................... AAATGCAAATAATAACCAAAAACTCTCAG 77 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 100.0 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : ACTGCCTCTTTATATAAATGCTTTAGTGGTGAATTGCGTAAAATTGCTTATCCAGAAATGTGATGGATAGATACAGTGAATATCGTATTATGTGGATACTTGTATTTTTTGATTTGCCTACAGAAACTCAAAAAGACAAGAAAGCTTATACCTTGTTTCGTAAGAACCTGCAGAAAGACGGCTTTACAATGTTTCAGTTTTCTATTTATGTTCGCCATTGTGCCAGTTATGAAAATGCAGAAGTTCATATCAAACGTGTCAAGTCTTTCCTACCGGAATTTGGTCAAATAGGGATTTTATGCATAACAGATAAACAGTTTAGCCAGATAGAATTATTTTATGGGAAGAAGCCTCAAATTAAGAATGTTGCTGGACAACAATTGGAGTTGTTTTAGAAATAAAAAATCCCGTATTTAAACGGGATTTTTATTAGAAATATTTCTTTTTTATTTCTAAAACGCTTTGCAACTTATTGGTTCTTATCTAGTTATTAGATATCA # Right flank : CTTCTTTACCTATAATAAAATCACATATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //